Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4160 300 3e-76 seq17955 145 2e-29 seq7871 102 2e-16 >seq4160 Length=1787 Score = 300 bits (332), Expect = 3e-76 Identities = 634/933 (68%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||||| |||||||||||| | Sbjct 1655 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTCCTCCGCGTC 1596 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | |||||| ||| ||| || ||||| ||| | |||| || || ||||| || ||| Sbjct 1595 GGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCAC 1536 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| | ||||| || || ||||||||||||| ||| || ||| | || Sbjct 1535 AAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 1476 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || |||||||| |||||||| || || | |||||| |||||||| Sbjct 1475 CACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTC 1416 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || |||||| | |||||||| |||| ||||| || |||||||| || ||| ||| Sbjct 1415 CTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCG 1356 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | || ||||| ||||| || ||| ||||||||| |||| Sbjct 1355 TGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACCAAC 1296 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTCGATGCTT 249227 ||||||||| || || || || || || || |||| ||| | || || ||| Sbjct 1295 TCGTACATCCGCGGCACGAACGGC-TCGTCGAACGGCCTCGTGCCCATGCTGCGTGTCTT 1237 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | || |||||| ||| || || ||||| |||||||| || Sbjct 1236 CAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGAT 1177 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 ||| |||| |||||||||||| || || |||||||||||| | || |||||| |||| Sbjct 1176 GTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGG 1117 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||||||||| | |||||||| |||||||||| ||||| || |||| | ||||| Sbjct 1116 CAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCAT 1057 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | |||||| ||||| ||||||| |||| || | | ||| ||| || |||| || Sbjct 1056 GAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGGCT 997 Query 249465 C--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAAC 249519 | ||| | |||| ||| |||| | || || || | | ||||| | | Sbjct 996 CTACACGACGT--GGGGCGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCGCGAG 942 Query 249520 GGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCC 249573 ||| || ||||||| ||| || | | || || |||| | | ||||| Sbjct 941 GGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGAGTCG 885 Query 249574 CAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||||| |||||||| |||||| ||| ||| ||| |||||||| |||| ||| Sbjct 884 CAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAAC 825 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | | || || || ||||||||| || ||||| ||| |||||| | | ||| | Sbjct 824 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGTACAC 766 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| || ||| | || || |||||||| || Sbjct 765 GTCGCCCGATGAGGTCGCGGTGTGCAACCTCGC 733 >seq17955 Length=783 Score = 145 bits (160), Expect = 2e-29 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| | || ||||| || || ||||||||||| |||||| | || | || ||| Sbjct 98 TGCTGTTCTATGGACCTCCAGGCACCGGCAAGACGTCGACCATCGTCGCTGTCGCGCGAC 157 Query 254071 CCCTGTTGGGC---GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || | ||| || || || | ||| | |||||||||||||| || |||| Sbjct 158 AGCTTTACGGCCCCGACTTCCGCAAGAACGGGCGGTTTCTCGAGCTGAACGCCTCGGACG 217 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGT 254187 | ||||| | | ||||| ||||| || |||||| ||| | || |||| | Sbjct 218 ATCGCGGTATCAAGGTCGTGCGCGAGAAAGTCAAGAGCTTCGCGCAGGGCGCGATCA-GC 276 Query 254188 CGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGA 254247 | ||| || | || ||||| |||||| || | | ||||||||||| ||| | |||| Sbjct 277 AGCTCCT-CCAGTATG-CCGCCGTTCAAGATCATCGTGCTGGACGAGGCCGACTCGATGA 334 Query 254248 CGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTT 254307 | | ||| |||||||| || || ||||| | |||||| | ||||| || ||||| | Sbjct 335 CAGGCGATGCGCAGTCGGCGCTGCGCCGCATGATGGAAAACTACTCCAAGGTCACGCGCT 394 Query 254308 TTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 | ||||| | || |||||||| |||| ||||| | ||| | || || || ||||| Sbjct 395 TCTGCCTCATTTGTAACTACGTCAGTCG--CATCATTGAGCCGATCGCGTCGCGTTGCGC 452 Query 254366 CAAGTTTCGATTC 254378 ||||||||||||| Sbjct 453 CAAGTTTCGATTC 465 >seq7871 Length=1281 Score = 102 bits (112), Expect = 2e-16 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 1230 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGC 1171 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | ||||| | |||| || || ||| Sbjct 1170 GAGATCATGTCCATCCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCGACACCAAGC 1111 Query 157364 TGGTTCAGCCAGTAGTCCGCCACA-AACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 || || || | || |||| |||| ||||||| |||| | | | | || Sbjct 1110 GCGTGGAG-GAGGCGATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCAT 1052 Query 157423 ACCGATGAGCGCGACGGGAAGCG 157445 ||||||||| |||| ||||||| Sbjct 1051 GCCGATGAGCTCGACCGGAAGCG 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072932659985536