Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4160 455 3e-123 seq7871 192 5e-44 >seq4160 Length=1787 Score = 455 bits (504), Expect = 3e-123 Identities = 1034/1536 (67%), Gaps = 34/1536 (2%) Strand=Plus/Plus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 |||||||| | | |||||||| | ||| ||||||| |||||||| |||| || || Sbjct 169 AACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCG 228 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| || || ||||| || ||||| || |||||||||||||| | ||| |||||||| Sbjct 229 TTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTG 288 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA---C 22642 | || ||||| || | | | ||||||| | ||||||||| ||| | || | Sbjct 289 CGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTC 348 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 ||||| || | ||||||| ||| | || || | ||| ||| | || || ||| Sbjct 349 GGCGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCG 405 Query 22703 TACGTTTCGTACGGACCAT-ATATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCGCCGT 22760 || | ||||||| || | | ||| || || || || | ||||||| ||||| Sbjct 406 TAGCTGCCGTACGGGCCGTGCTCCCGC-GCGAGCTC-CATCGAGGCCTCCATGGCGCCAA 463 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 | || | ||||||||||| |||||||| | ||| ||| || |||| ||| || || Sbjct 464 AGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAAC-GCG 522 Query 22821 TA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || | ||| | | |||||||||||| | |||||| ||||| || |||||||| |||| Sbjct 523 TAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGG 582 Query 22880 TTCAGATT-CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 ||| || | | | | |||||||| | || || | || ||||| |||| Sbjct 583 CGCAGGTTGCTGCGC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTT 641 Query 22939 CAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA 22998 || ||| | || || | || || || | ||||| ||| | | Sbjct 642 CAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTGGAAGTC--AAAGGTCTTG 699 Query 22999 TTGT--ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 | || ||||||||| | ||||| || || || ||||| || || ||||| || Sbjct 700 TCGTCGGTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCG 759 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||||||||||| | | ||| || || ||||| | |||||||| | || Sbjct 760 GGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTC 819 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||| || || |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 820 TGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCG 879 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CT 23235 | ||||||||||| |||||| ||| | ||| ||| | | |||| || | | Sbjct 880 ATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA-TCGTCTTGCGCGCGCG 938 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTC--GGCC 23293 ||| || |||||||| ||||||| ||| || || ||| | || | ||| | Sbjct 939 GCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCA--CGTCGTGTAG 996 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 || || |||| | |||| || | || |||||| || || ||||| || Sbjct 997 AGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTC 1056 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || ||||| || ||||| | |||||||| || || || ||||| | ||| ||| Sbjct 1057 ATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTG 1116 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 ||| |||||| || | |||| || || || | ||| || ||||||||||| ||||| Sbjct 1117 CCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTAC 1176 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | || |||| |||| | ||| ||||||||| |||||||| || ||||||| |||| Sbjct 1177 ATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTG 1236 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG-CCCGC-CACACTCG 23591 | || | ||||| |||||||| ||||| |||| |||| | || |||| | || Sbjct 1237 AAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCG--TTCGTGCCGCGGATGTACG 1294 Query 23592 AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCA 23651 | | || || | |||||| ||| || || ||||| || || | || || || Sbjct 1295 AGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGC 1354 Query 23652 TCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCA 23711 |||||| || || || |||||||||||||||||||| ||| || || | |||| || Sbjct 1355 ACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCA 1414 Query 23712 AGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771 ||| ||||| |||| |||| ||||| | || |||||| ||||| | |||| Sbjct 1415 GGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGT 1474 Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 |||| ||| | | | |||||| | |||||| |||| ||||| |||||||| | Sbjct 1475 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCT 1534 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGC 23888 ||| || |||| |||||| |||| ||||| | || || | || ||||| || ||| Sbjct 1535 TGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCGCGACCTTGCCGC 1594 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 || | || ||||| || | | ||| || || ||||| ||||| || | || Sbjct 1595 CG---ACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAA 1651 Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 |||| || ||||| | || ||||| || | |||| Sbjct 1652 AGTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGT 1687 >seq7871 Length=1281 Score = 192 bits (212), Expect = 5e-44 Identities = 552/831 (66%), Gaps = 20/831 (2%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || ||||||| ||| || | || || Sbjct 380 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTG 439 Query 57633 AAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTG 57692 | || || | || |||| ||||| || ||| | | ||||| || ||||| Sbjct 440 CATGACCTCAAGGACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCACGTC 499 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 | ||||||||||| || ||| ||||| || |||||||| | | || | || |||| Sbjct 500 CTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCG-CG-ATGAACTTCA 557 Query 57753 -CA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAA 57810 || || ||||| || | |||||| | ||||| || ||||| || | |||||||| | Sbjct 558 GCAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATTGAGA 617 Query 57811 ACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC-GAG 57869 || | || || || |||| ||||| ||||| || |||||| | |||||| | ||| ||| Sbjct 618 ACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCA-GACTGAG 676 Query 57870 AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGC-CAAGAAGGCAGAGTG 57928 || || || ||| ||||| || || |||| | || |||||||| | || Sbjct 677 AAGAACCACCTTCTCCGCGCCATCGAGACCAT-CCCGTGCGTGCAGAAGAAGGCGCACTG 735 Query 57929 GTCAATCAAATGG-ATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCG 57987 | | |||| ||| | ||||| | || | || || ||| | | | ||||||| Sbjct 736 GGCGCTCAAGTGGTGCGACTCGCGCCGC-GCGGCTTTTGCTGAGCGCATCGTTGCGTTCG 794 Query 57988 CCGCCGTCGAAGGTATATTCTTTTCGGGC-AGCTTTGCGGCAATATTTTGGATGAAGAAA 58046 | || ||||| ||||| ||||| |||||| | | ||| | || || ||| | ||||| Sbjct 795 CTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAG 853 Query 58047 CGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTC 58106 || || || ||||| ||||| | || |||||| | || |||||||| ||||| ||| Sbjct 854 CGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTC 913 Query 58107 CATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGC 58166 || || || ||||| || ||||||| | ||||||| || | || | ||| Sbjct 914 CACTGCGACTTCGCGTGTCTGCTGTACTCGAAGCTTGTCAACAAGCTCCCGGAGTCGCGC 973 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTA 58226 ||| || || || ||| || ||||| || || || ||||| ||| || | || Sbjct 974 ATCCACGAGATCATTCGCGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGGACTCGCTT 1033 Query 58227 CCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCC 58286 ||||| | | |||| |||||| | |||| ||||||||||||| |||| Sbjct 1034 CCGGTCGAGCTCATCGGCATGAACTCGTCGCTCATGTGCCAGTACATTGAGTTCTGTGCC 1093 Query 58287 GACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTT 58342 || | | | ||| | | |||| | || || ||||| | || ||||| Sbjct 1094 GATCGCC---TCCTCCACGCGCTTGGTG-TCGCCAAGATCTACAAGGTGTCGAACCCGTT 1149 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | ||| | ||||||||||| |||||||||| ||||| ||||| || Sbjct 1150 CGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445428720807840