Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq46689 95.1 8e-15 seq22547 86.0 4e-12 seq22503 86.0 4e-12 >seq46689 Length=383 Score = 95.1 bits (104), Expect = 8e-15 Identities = 202/298 (68%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || || || || || |||||||||| ||| ||||| || | |||||| Sbjct 55 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 114 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 | ||||| || | ||||| || || | || || | ||| | || |||| Sbjct 115 ATGAACTCGCCAGCGCGCAGCCCTGTGACCTGCGCGATGAGTCGCGTCAACAGCGCGTAG 174 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 || |||||||| || || || |||| ||||| || | || | ||||| | |||||| Sbjct 175 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCT-GAGCGTTGGTACATCTGACA 233 Query 25593 CGAGAGCTCTTCGT-CGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 |||||||| | | ||| ||||||||||| || | ||| |||||| || || || | Sbjct 234 GGAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATGTGGCACGGCGGCAGCGCCA 292 Query 25652 TAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT 25709 | | ||| ||||||||| || ||| |||||||| || || | ||||| Sbjct 293 TCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTT 350 >seq22547 Length=674 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 25738 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 25797 |||||||| || ||| || |||||||| || ||| |||||||| || || || Sbjct 46 AGCTGATCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCACCAAAG 105 Query 25798 TACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857 | | ||||||||| || ||||| ||||| || || ||| |||| | || | | ||| Sbjct 106 TGGCGCCACTGGAAGCCATACACTGGTCCGAGATCGCCAGCTTCGCGATGTCCGAGGCCG 165 Query 25858 CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCG-GA 25916 | | || | | || | || |||||| | ||||||||||| | ||||| || | Sbjct 166 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 225 Query 25917 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGAC 25970 | |||| | | || || || |||| |||||||||||||||| ||| ||| Sbjct 226 AATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGAC 278 >seq22503 Length=674 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 25738 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 25797 ||||| || || ||| || |||||||| || ||| |||||||| ||||| || Sbjct 629 AGCTGGTCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCTCCAAAG 570 Query 25798 TACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857 | | ||||||||| || ||||| ||||| || || ||| |||| | || | | ||| Sbjct 569 TGGCGCCACTGGAAGCCATACACTGGTCCAAGATCGCCAGCTTCGCGATGTCCGAGGCCG 510 Query 25858 CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCG-GA 25916 | | || | | || | || |||||| | ||||||||||| | ||||| || | Sbjct 509 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 450 Query 25917 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGAC 25970 | |||| | | || || || |||| |||||||||||||||| ||| ||| Sbjct 449 AATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGAC 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339886378832946