Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4160 378 2e-99 >seq4160 Length=1787 Score = 378 bits (418), Expect = 2e-99 Identities = 969/1458 (66%), Gaps = 32/1458 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||||| || | || ||||| | || |||| Sbjct 1580 GAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCACGACATTGAC 1521 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCACGCCACGCCAA 363565 |||||| | || || || || | | || || | | ||||||||||| ||||| | Sbjct 1520 GCCGCGCTCGAGACGTACGAG--TACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGA 1463 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | ||| ||| || || || | || ||| |||| || ||||| || || |||| Sbjct 1462 CGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGA 1403 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| || |||||||| |||| ||||| || ||| | || || || |||||| Sbjct 1402 AGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGT 1343 Query 363686 ATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 || ||||| || || || | || | ||||| | || || ||| ||||| ||| Sbjct 1342 GGGCTGGCGGCATCGGCGTCAGCG-TGCACAACATCCGCGCGACCAACTCGTACATCCGC 1284 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || | ||||| || || || |||||||| ||||| || || | || ||| Sbjct 1283 GGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGTGTCTTCAACGACACGGCG 1224 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | |||||||||||||| || || |||||||| || |||| || ||||| || ||||| Sbjct 1223 CGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTACCTGGAGCCG 1164 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || ||||| || || ||||| || || ||| ||| ||| || || ||| Sbjct 1163 TGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGGCAACGAGCTGCAC 1104 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || |||||||| ||||| || | ||| | | || | || ||||||||||| ||| Sbjct 1103 CGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCATGAAGCGCGTCGAG 1044 Query 363985 GCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC--GATG 364039 || || || ||| || || ||||| |||| || || || | | || | Sbjct 1043 GCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGGCTCTACACGACG 987 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 | |||| ||||| | | || || ||| | |||| || ||||| || || | Sbjct 986 T--GGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCA 929 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| || | ||| ||| |||| ||||| || ||| | || |||||||| |||||||| | Sbjct 928 AGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACAGGCA 869 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | || || ||| ||||||| || ||||||||||||||||| ||||||||| |||| || | Sbjct 868 CGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCA 809 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || | ||||||||| || |||| | | || ||||| | ||||| ||| | Sbjct 808 CGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCCGATGAGGTCG 749 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTG 364336 | || || ||||| ||||| |||||||| | |||||| | | || || |||| Sbjct 748 CGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGACCGACGACAAGACCTTTG 689 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCG 364396 || |||| | || || ||| | ||| | | || |||| || ||||||| |||| Sbjct 688 ACTTCCAGAAGCTCTACGACATCACCAAGGTCGTCACGCGCAACCTGAACAAGGTCATCG 629 Query 364397 ACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTG 364456 ||| || || || || || || || |||||||| || |||| || |||||||| | Sbjct 628 ACATCAACTACTACCCGATCCCCGAGGCCGAGCGCAGCAACCTGCGCCACCGCCCGATCG 569 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGCATTTGA-T 364512 | | || || ||||| ||||| |||| | | || |||| | || || || Sbjct 568 GCATCGGCGTGCAGGGTCTCGCGGACGCGT---TCATCCTCATGGGCTACGCGTTCGAGA 512 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || | || || || | || || ||| | ||||| || || |||| |||| ||| ||| Sbjct 511 GCGAC-GAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTTGGCGCCATG 453 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 || ||| || | || | || |||| | || ||||| || || Sbjct 452 GAGGCCTCGATGGAGCTCGCGCGGGAGCACGGCCCGTACGGCAGCTACGAGGGTTCGCC- 394 Query 364633 CTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATCTGTCCGATG 364688 | | || |||| | |||||||| || | ||| ||||||| | || | | || Sbjct 393 CGTGAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACGCCGACGTCGGGTCTCTG 334 Query 364689 GAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | |||||| |||| | | ||| | || | || |||||||| || | Sbjct 333 GGACTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGTACGGCGTGCGCAACTCGCTGCTGCT 274 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 ||||| ||||| ||||| || ||||| ||||||||||| |||||||||| |||| || Sbjct 273 CGCGCCGATGCCGACGGCGTCGACTGCGCAGATCCTCGGCAACAACGAGTCGATCGAGCC 214 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 ||| || | ||| | || ||||| || || | || || || || | || || || Sbjct 213 GTTCACGACCAACATGTACAACCGCCGCGTGCTCGCTGGCGAGTTCACGATCGTGAACAA 154 Query 364869 GTACCTAGTCAAGGATCT 364886 |||||| | ||||| || Sbjct 153 GTACCTCATGAAGGAGCT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302341593990764