Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq385 95.1 1e-14 seq38185 93.3 5e-14 seq38184 93.3 5e-14 seq12203 93.3 5e-14 seq394 91.5 2e-13 >seq385 Length=5345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 ||||||||||||| || || | ||| | ||| || || ||| |||| || || || |||| Sbjct 3207 TGGTGTAAATGTAACGAGGTGATGCTGCATCTTTACCACCCCCCAATCGAGTACCGAACT 3148 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 |||||| ||| ||| | || | |||||| |||||| || || ||||| | |||| Sbjct 3147 GACCGTTCGGAGACAAAAGATGGATGTTGTTGCTTCCCACGAAATCTTGCGCCATGTTGA 3088 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 || || || || |||||||||| || | || | | || |||| ||| || | Sbjct 3087 TGATCGTGCCGTTGAGACTCTGCTCGCCATGGTGATAAGCAGAATGTTCGGACACATATC 3028 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || ||||| ||||| ||||| Sbjct 3027 CGGCAAGCTGAGCAACTTTGAT 3006 >seq38185 Length=452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | |||||||| ||| || | ||||||||||||| || ||||||||||||||| Sbjct 392 GTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTGT 333 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || || | | || | ||| |||||||| || || |||||||||| | ||||| Sbjct 332 CCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGACG 273 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCG 126360 || ||| | ||| | ||||||||| | ||| | || ||||| |||||| Sbjct 272 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCTGTGTGCTCACTGCAGTAGCCA 213 Query 126361 CTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 212 GCGAGCTGCGCGACCTTGA 194 >seq38184 Length=452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | |||||||| ||| || | ||||||||||||| || ||||||||||||||| Sbjct 392 GTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTGT 333 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || || | | || | ||| |||||||| || || |||||||||| | ||||| Sbjct 332 CCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGACG 273 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCG 126360 || ||| | ||| | ||||||||| | ||| | || ||||| |||||| Sbjct 272 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCTGTGTGCTCACTGCAGTAGCCA 213 Query 126361 CTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 212 GCGAGCTGCGCGACCTTGA 194 >seq12203 Length=990 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 606 ATCTTCATCGGCCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 547 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 546 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 487 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 486 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGTGACTG---TCTGATCTCGCACGGCTCG 430 Query 15575 ACCCAATTCCTCAACGAGCGC 15595 || | ||||||| || ||| Sbjct 429 GCCAACTTCCTCATGGACCGC 409 >seq394 Length=5308 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 |||||| | || |||||| ||||| || ||| |||||||| |||| ||||| || Sbjct 3870 TCGGGCATCACGGGCGAACCGATCCTGTGCTACATCTTTATGGGCCCGATCTACTACCAG 3929 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAG-GTGACGAC 15483 ||||| |||||||| | ||||||||||||||||||| || || | | | | || Sbjct 3930 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCGCGAGCGAGAGGCCCGCGCGCCG-T 3988 Query 15484 GCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGAT 15543 |||| || ||||| | | || || |||| | ||| ||||| || | || ||||| Sbjct 3989 GCTCACGCGGCAGCCGACCGAGGGCCGCTCGCGCGACGGCGGCCTGCGTCTCGGCGAGAT 4048 Query 15544 GGAAAAGGACTGCATTCTGGT--GC-ACGGCGCCACCCAATTCCTCAACGAGCGCATGTT 15600 ||| ||||| |||| | || ||||||| | | | |||| |||||| | | Sbjct 4049 GGAGCGCGACTG---TCTGATCGGCTACGGCGCGAGCATGCTGCTCATGGAGCGCCTCAT 4105 Query 15601 TCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATG 15649 || || ||| ||||| | ||||||||| | | |||| ||||| Sbjct 4106 GATCTCGAGCGACGCGTTCACGGCGGACGTGTGCCAGGGCTGCCGCATG 4154 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 3525 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 3584 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 3585 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 3643 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| | ||||| | ||||| ||||| || || ||||| ||||||||| Sbjct 3644 CGAC-GGCGTCTGCCCCGATCTCATCATGAACCCGCACGGCTTCCCGAGCCGCATGAC 3700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610928855275200