Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2345 176 9e-39 seq7871 170 4e-37 seq44924 91.5 3e-13 >seq2345 Length=2372 Score = 176 bits (194), Expect = 9e-39 Identities = 448/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || ||||||||||||||||||||||| | | | || ||||| | Sbjct 722 TGCCTGTCGGTGCCCTCTCGGGTGGTTGGAAGATGAAGCTTGAGTTGGCCCGTGCCATGC 781 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || || |||||||| || |||||| |||| ||||| Sbjct 782 TCATGAAGGCTGATATCCTCCTTCTCGATGAGCCGACGAACCACTTGGATGTGCACAACG 841 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || |||||||| || | Sbjct 842 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATTGTGTCGC 901 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 902 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGCA 958 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 |||| | | ||| || ||||| |||| ||||| ||| || || ||||| Sbjct 959 AGCTGAAGACGTACAAGGGTAACCTCTCTGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 1016 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| || || ||||| ||||||||||| || || || Sbjct 1017 GACGTACTACGAGCTTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCTGGTTTCCT 1076 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| || | ||| | | Sbjct 1077 TGCCGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTGACGAACTGCTCGTACCAGT 1135 Query 280108 ATCCCAATGGCCCCAACAT--CTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | || | || Sbjct 1136 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGCTCGCTCGCCT 1192 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| |||||| || ||||| ||||| |||||||| || || ||||| | || | Sbjct 1193 CGCGTATTGCTGTCATCGGCCCCAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTTA 1252 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| || | || | || | || |||||||| || |||||| | || | Sbjct 1253 CGGGTGAGGTTGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 1312 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||| ||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 1313 ACGTTGCCCAGCACGCGTTCCACCACATTGAGGAGCACCTCGACATCACGGCCAACCAGT 1372 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 1373 ACATCCAGTGGCG 1385 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 384 GGATCTCTGCAACTGCGAGTTCTCGCTCGCCTACGGTGGTATGATTCTGCTGAACAACGC 443 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 |||||| | ||||||||||| |||| || ||||| ||| || || || ||||| Sbjct 444 CCGCCTTCGCCTCAAGCGTGGCCACCGCTACGGTCTGTGCGGCCCGAACGGTTGCGGTAA 503 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| || || || ||| ||||| || Sbjct 504 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCGAGGGCTTCCCT-ACGCAGGATG 562 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 563 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 594 >seq7871 Length=1281 Score = 170 bits (188), Expect = 4e-37 Identities = 540/822 (66%), Gaps = 20/822 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 1197 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAACGGGTTCGAC 1138 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACA-AACTCCAG 251681 | ||||| ||||| ||||| || || || ||| || || ||| ||||| | Sbjct 1137 ACCTTGTAGATCTTGGCGACACCAAGCGCGTGGAGGAGGCGATCGGC-ACAGAACTCAAT 1079 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || ||||||||||| || | |||| |||| | || || Sbjct 1078 GTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCGACC-GGAAGCGAGTCCTGGA 1020 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| ||||| || | || || || || | || | | | | | | | | Sbjct 1019 CGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCTCGTGGATGCGCGACTCCGGGA 960 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGT 251857 ||||||| | ||||| |||||||| || | ||| || || | ||| || ||||| | Sbjct 959 GCTTGTTGACAAGCTTCGAGTACAGCAGACACGCGAA---GTCGCAGTGGAGGCCCTCAT 903 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||||| |||||| || | | ||||||||||| | ||||| ||| |||||| Sbjct 902 CGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCC 843 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || || || ||||| | | |||||||||| | | ||||| | Sbjct 842 AGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCGACAGCAGCGAACGCAACGA 783 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCA-TGCTGCCTTC 252033 |||||||||||| | | | |||| | |||| | ||||| ||| |||||| Sbjct 782 TGCGCTCAGCAAAAGCCGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGC-GCCTTC 724 Query 252034 TT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 || | || | | ||||| || ||||| || | || |||| ||| | | ||| Sbjct 723 TTCTGCACGCAC-GGGATGGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCAGTCTGGTC 665 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || |||| || || ||||||| |||||| |||||| || || || Sbjct 664 CTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATGGCGAT 605 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| | ||||||| |||||| |||| | || || || ||||| | || Sbjct 604 CTGGAATCCATAGAAGCAACGCGCCTCAGGGACCTGCACCTCGCTGCTGAAGTTCATCGC 545 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || || || ||||| | || || || | || | | |||||| || Sbjct 544 GAGGTTCTCGTTGACGATACCGTCGCTCGCCGCGAAAAACGCGAGGACGTGCTTGATAAA 485 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 ||| ||||| | ||| |||| ||| | |||||| | ||| || ||| | Sbjct 484 GTGGCGCTCGTTGTCCGTGAGGTTG---CCCCAGTCCTTGAGGTCATGCACGAGATCGAT 428 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || | |||||||| | | | | |||||||||||||| Sbjct 427 CTCCTCGGCGGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 386 >seq44924 Length=395 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 338 AGCCCGTTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027038722626282