Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4160 504 1e-137 seq7871 329 6e-85 seq28841 93.3 8e-14 >seq4160 Length=1787 Score = 504 bits (558), Expect = 1e-137 Identities = 1020/1499 (68%), Gaps = 45/1499 (3%) Strand=Plus/Plus Query 244000 GTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC 244059 ||||||||||||||| | || | || || |||| |||||| | |||| | ||| Sbjct 66 GTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCC 125 Query 244060 CAAGCGCTCCA---GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAG 244116 | |||| | || ||| | |||| | ||||||| | | ||||| || | || Sbjct 126 GA---GCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAG 182 Query 244117 CACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTAT 244176 ||||||||| | ||| | |||| | ||| ||||||||| ||| ||||||| || || Sbjct 183 CACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGAT 242 Query 244177 CTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCT 244236 |||||| || ||| |||||||| |||| | |||||| ||| | |||||||| | Sbjct 243 CTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTG 302 Query 244237 CTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296 | || || ||||| || ||||||||| | ||||| ||| || ||| Sbjct 303 CGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGAC--GTCGGCG----TGAC 356 Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||||||| ||||| | | |||||||| ||||| ||||||||| | ||| Sbjct 357 GCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTA 416 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCT 244415 || |||| | | || |||| || | | || | |||| | |||| | |||| Sbjct 417 CGGGCCGTGCTCCCGCGCGAGCTC-CATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCT 475 Query 244416 CGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCA 244475 ||||||| ||||||| | |||||||||| | ||| ||| | | |||||| | | Sbjct 476 CGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGA 535 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 |||| |||| || || |||||||||||||||||||| || | ||| ||| |||| || Sbjct 536 TGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGC 595 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 || ||| ||||| | ||||| ||||| |||||| |||||||| |||||||| |||| Sbjct 596 GCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGA 655 Query 244596 TCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 | | || |||| ||| ||| ||||| | | | || |||| Sbjct 656 CGACCTTGGTGATGTCGTAGAGCTTCTGGAAGTCAAAGGTCTTG---TCGTCGG------ 706 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 ||||||||| | || |||| | || |||||||| || || ||||| || | Sbjct 707 ------TCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGG 760 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 ||||||| || | |||| ||||||||| || | ||| ||||| |||| || Sbjct 761 GCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCT 820 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 | || || |||||| |||||| | ||||||||| |||||| | ||| || ||||||| Sbjct 821 GCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGA 880 Query 244836 GCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG 244894 ||| | |||||| ||| | |||||| | | || || |||| |||| || | Sbjct 881 TCTGCGACTCGAGGATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGG 939 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG- 244953 ||||| |||||| || |||||| |||||||||||| ||||| || |||| ||| Sbjct 940 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCC--ACGTCGTGTAGA 997 Query 244954 GCCGGGGCACGACG-CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCA 245012 ||| ||| | || |||||| | || |||||||||||| | ||| ||| | || || Sbjct 998 GCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCA 1057 Query 245013 TGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGC 245072 ||||||| ||||||||||| | || | |||||| || | | | ||| || || Sbjct 1058 TGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGC 1117 Query 245073 CAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 | ||||||| | || |||| || || |||| |||| ||||||| ||||||| ||| | Sbjct 1118 CGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACA 1177 Query 245133 CAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGA 245192 |||| | ||| |||||| ||| |||||||| || | | | |||||| Sbjct 1178 TCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGA 1237 Query 245193 AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252 ||| ||||| | ||||| | |||||| || |||||| ||||| |||||| | | Sbjct 1238 AGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG- 1296 Query 245253 CCTTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATG 245308 ||| | | || || || || || | ||| | ||||| || |||||||||| Sbjct 1297 --TTGGTCGCGCGGATGTTG-TGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATG 1353 Query 245309 AGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGC 245368 ||||| ||||| ||||| |||||||| || ||| ||||||| |||| Sbjct 1354 CACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGC 1413 Query 245369 AGAAAGCAGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGC 245427 || ||||| || |||||||| |||| || | ||| || ||||||||| || || | || Sbjct 1414 AGGAAGCACGACGACAGCTGCGGGCGCGGCG-TGCCCGCGTTGAACAGCGTCGGCGTCGC 1472 Query 245428 GTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGT 245486 ||| || ||| ||| ||| | | || ||||||||| |||| ||||| |||| || Sbjct 1473 GTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGT 1531 >seq7871 Length=1281 Score = 329 bits (364), Expect = 6e-85 Identities = 583/840 (69%), Gaps = 15/840 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || | |||||||||||||||||| || || | | ||| Sbjct 386 ATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTGCATGAC 445 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| || | || ||||| || |||| || | || || Sbjct 446 CTCAAGGACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCG 505 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 || ||||| || ||||| || ||||| |||||||| || | | |||| | ||| Sbjct 506 TTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTTCAGCAGCGAG 565 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||||||| |||||||| || |||||||| ||||| |||||| | ||| Sbjct 566 GTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATTGAGAACATCCAC 625 Query 42549 TCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTC-GAGCGTAA 42604 || ||||||||| | ||||||| ||||||||||| ||| || | | ||| || Sbjct 626 TCGGAGGTGTACTCG---CTGCTCATTGACACGTACATCAAGGA-CCAGACTGAGAAGAA 681 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || || ||||| ||||| || || ||| | ||||||||||| |||||||||| Sbjct 682 CCACCTTCTCCGCGCCATCGAGACCATCCCGTGCGTGCAGAAGAAGGCGCACTGGGCGCT 741 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||| ||| ||| | | ||| | || | ||| | | || || || | || || Sbjct 742 CAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATCGTTGCGTTCGCTGCTGT 801 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGT 42783 |||||| ||||||||||||||| | ||| ||||||||||||||||||| || ||| | Sbjct 802 CGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCT 861 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | ||||| || |||| |||||||||||| |||||| | || ||||| || || | | Sbjct 862 C-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCG 920 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 |||| || || || |||| ||||| | ||| |||||| | || || ||| ||| Sbjct 921 ACTTCGCGTGTCTGCTGTACTCGAAGCTTGTCA---ACAAGCTCCCGGAGTCGCGCATCC 977 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||| || || || | || |||||||||||| || | | ||||| || | Sbjct 978 ACGAGATCATTCGCGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGG 1037 Query 42964 TGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 | || |||||||||| | || | ||||||||| ||||||| ||| | ||||| Sbjct 1038 TCGAGCTCATCGGCATGAA-CTCGTCGCTCATGTGCCAGTACATTGAGTTCTGTGCCGAT 1096 Query 43023 CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 | ||||| | | | ||| || | ||||||| | || ||| ||||||| Sbjct 1097 CGCCTCCTCCACGCGCTTGGTGTCGCCAAGATCTACAAGGTGTCGAACCCGTTCGACTGG 1156 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| | |||||| | |||||||||||||||| |||||||||||||| | ||| ||| Sbjct 1157 ATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 1216 >seq28841 Length=564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 215/319 (67%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 242859 GAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGCATGCTGGTCAAGGCCCTGCTG 242918 || ||||||||||| | || ||| |||||||| || | ||| | || ||| | Sbjct 170 GAGGGCGTCGATCGCTGCGGCAAGACGACGCAGACACGTCTACTGCACGAGAAGTTGCAG 229 Query 242919 GAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGACAGGACCACTCCGATCGGACAG 242978 | | |||| | || | | |||| || ||||| ||| | | ||| | ||||| ||| Sbjct 230 GCGCTGGGCCGCCAGTCGGCGCTGCTGCATTTCCCCGACCGCAGCACGGCCATCGGGCAG 289 Query 242979 ATGATCAACTCGTACCTGCTCAAC-AAGAGCGATCTGGACGATCACGTCGTACACCTCCT 243037 |||||| ||||||| | | || || || ||||||| | || | || || || Sbjct 290 TCCATCAACGCGTACCT-CACGACGGCGACCGCGATGGACGACCGCGCGATTCATCTGCT 348 Query 243038 GTTCTCGGCCAACCGATGGGAAGCCGCCTCCGACCT-GAAGCGCAAGCTGATGAAGGGTA 243096 |||| | || ||||| ||||| |||||| | | | || | || ||| | || || Sbjct 349 GTTCGCTGCGAACCGCTGGGAGGCCGCCAGCAAGATCGAGGAGC-TGCTCAAGAGCGGCG 407 Query 243097 CCACCATCGTGCTCGACCGCTACGCGTTCTCCGGCGTAGCCTTCACGGCGGCGAAGCCCG 243156 | | |||| | ||||||||| ||||| |||||| || ||| | ||||| ||||| | Sbjct 408 TTAACGTCGTCATGGACCGCTACTCGTTCAGCGGCGTGGCGTTCTCAGCGGCCAAGCCAG 467 Query 243157 GGTTCGAGCTCGAGTGGTG 243175 || || |||||| ||||| Sbjct 468 GGCTCTCGCTCGACTGGTG 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943623839447520