Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2345 185 2e-41 >seq2345 Length=2372 Score = 185 bits (204), Expect = 2e-41 Identities = 687/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 1410 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 1351 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 1350 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 1291 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| || | || | | ||||| |||| ||| ||||| || Sbjct 1290 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGA 1231 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCA-T 333552 || || ||||| || ||| | ||| |||| | ||| ||||| ||| Sbjct 1230 CTTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA-------GCACG 1178 Query 333553 TCACGT---TGTCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 |||||| ||||| ||| | || || || || |||| | | | || | Sbjct 1177 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTA-CGAGCAGTTC 1119 Query 333607 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 333662 || || ||||| ||| || |||| ||||| | | ||||| || ||||| Sbjct 1118 GTCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCA 1062 Query 333663 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 1061 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 1005 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || ||| |||||||| || || || ||||||||| |||||||||| |||| ||| Sbjct 1004 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCG 948 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 947 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGC 888 Query 333840 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAA 333899 ||| |||| | | ||| | | ||||| || |||||| | ||||| |||| Sbjct 887 GACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 828 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| |||||||| || ||||| || | | || |||| |||||| ||||| || Sbjct 827 AAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 768 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 334019 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 767 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 714 Query 334020 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 334071 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 713 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 659 Query 334072 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 ||| ||| | || ||| | |||||||| |||| | | | || || Sbjct 658 GGTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 602 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 334191 | | ||| | ||| || ||| | | || || | ||||| | ||||| || | Sbjct 601 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCCT 542 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||| |||||| || |||||||| || || || ||||| ||||| || || | Sbjct 541 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGC 482 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 ||||||||||||||| |||||||| || | || | |||||||| ||||| | | Sbjct 481 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 422 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 |||| || || || || || || || | || |||||| Sbjct 421 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102023654348700