Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4160 235 7e-57 seq7871 212 7e-50 seq385 93.3 5e-14 >seq4160 Length=1787 Score = 235 bits (260), Expect = 7e-57 Identities = 521/770 (68%), Gaps = 21/770 (3%) Strand=Plus/Plus Query 114551 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 114610 || ||||| | ||||| || || ||||| ||| |||| |||||||| |||||||| Sbjct 805 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 864 Query 114611 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCAC 114669 ||||| || ||||| | || |||| ||| || || ||||| || |||| || | Sbjct 865 GGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGC 919 Query 114670 AG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 114725 | | | ||| || || ||||| |||||||| ||| || || || ||||| | Sbjct 920 GGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 979 Query 114726 CACCC-ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 114784 | ||| ||| | | | ||||||| || |||| | |||||||| || ||| | || Sbjct 980 CGCCCCACGTCGTGT-AGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCG 1038 Query 114785 CCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 |||| || |||||||||||||| || |||||||| | || |||||||||| || Sbjct 1039 TTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGC 1098 Query 114845 CAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| || || | | || || || | |||| || || | ||| || || Sbjct 1099 GCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGC 1157 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTAC 114960 ||||||||| |||||||||| ||||| || ||||| || | || |||||| || Sbjct 1158 GTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGAC 1217 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | ||| ||| | || || || || ||||| || | || || | || ||| || Sbjct 1218 GTAGCGCGCCGTGTCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTT 1277 Query 115021 TGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCC 115078 || || || || ||||| || | || | || | || | | | || || || Sbjct 1278 CGTGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCG 1335 Query 115079 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAG 115138 || |||||||| ||||| |||||||| | |||| || ||||||| || ||||||||| Sbjct 1336 CCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAG 1395 Query 115139 TCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 115198 || |||| | |||| |||||||| ||||| || || | || || || |||||| Sbjct 1396 TCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTG 1455 Query 115199 AAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAG 115258 || || || || |||||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 1456 AACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGC 1515 Query 115259 ACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 ||||| |||||| | | ||| || |||| | ||| |||| || ||| Sbjct 1516 GCGGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCAT 1565 >seq7871 Length=1281 Score = 212 bits (234), Expect = 7e-50 Identities = 405/587 (69%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 1222 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 1163 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGA 125870 ||||| | || || |||||| || | || ||||| || |||| | | || Sbjct 1162 GTCCATCCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCGACACCAAGCGCGTGGA 1104 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 |||| ||||| | | |||||||||||| |||| | |||||||| ||||||| Sbjct 1103 GGAGGCGATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGA 1044 Query 125931 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | | || |||| |||| || |||| |||||||||| | || || || || | || Sbjct 1043 GCTCGACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGA 984 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| ||| | || || || | | ||| ||| |||| | || Sbjct 983 TCTCGTGGATGCG--CGACTCCGGGAGCTTGTTGACAAG-CTTC--GAGTACAGCAGACA 929 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || |||||| ||||| || || |||||||| || |||||||||| || | Sbjct 928 CG-CGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGC 870 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | ||||||||||| |||||||| | |||||| || | || || || ||||||||||||| Sbjct 869 CAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 810 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCA 126223 | ||||| ||| |||||||||| || |||||||| |||| ||||| | | ||| Sbjct 809 TACCCTCGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCG 751 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | |||||| |||||||| |||| | ||||||| ||||| ||| || Sbjct 750 CACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGG 691 Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | || | ||||| || | | || ||||||||| | || ||||| Sbjct 690 AGAAGGTGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAATGAG 644 >seq385 Length=5345 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 172808 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTC 172867 || || ||||||||||| | ||||| ||||| || || || ||| | ||||| |||| Sbjct 2157 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 2098 Query 172868 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCC 172927 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 2097 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 2038 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 172971 | |||||||||||| | ||| ||||| || || | || ||||| Sbjct 2037 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596901089714160