Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4160 297 2e-75 seq7871 154 1e-32 >seq4160 Length=1787 Score = 297 bits (328), Expect = 2e-75 Identities = 1045/1603 (65%), Gaps = 53/1603 (3%) Strand=Plus/Plus Query 152882 CTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTT 152941 ||| |||||||| |||| |||||| | || ||| ||||| || | | ||| Sbjct 9 CTTGATCTCCCACACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTT 68 Query 152942 CTGAATAGAGCCCTTGT-GTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCA 153000 ||| | ||||| | || ||| | | | ||| || | |||||||| | | | | Sbjct 69 CTGCACCGAGCCGTGGTCGTGGAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATGCCGA 127 Query 153001 GTTTAATGAGGTCATCGATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACT 153059 | | ||||| || | || | ||||| ||| || | | |||| |||||| || | ||| Sbjct 128 GCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAA-CTCGCCAGCGAGCACG 186 Query 153060 CGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGA 153119 || | || | ||| | ||||| || || | || ||||| ||||| || || || Sbjct 187 CGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGC 246 Query 153120 GCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCG 153178 || || | || |||||||| ||| | || || || || |||| ||||| | || || Sbjct 247 GCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCG 306 Query 153179 AATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACAT 153235 | ||| |||| | ||| ||| ||||| || |||||| | || || |||||| Sbjct 307 ACGCTCG-CCTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACAT 365 Query 153236 GTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT- 153294 |||| |||| || | || || |||| | ||| | ||||||||||| Sbjct 366 GTCGAACTGGAAGATGCCCTTGCTCACGGG--------CGAACCCTC-GTAGCTGCCGTA 416 Query 153295 -----CGCGTT---GGGCCAGTTCGCAGCTAG-CCTCGAGCGCGCCATAGTATATGGTTT 153345 || | | | || || || || | || |||| | |||||| |||| | || | Sbjct 417 CGGGCCGTGCTCCCGCGCGAGCTC-CATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCT 475 Query 153346 CGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCA 153405 || ||| | || ||||| || || || ||||||||| ||| || || || | Sbjct 476 CGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGA 535 Query 153406 CAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGC 153465 || ||||| || |||||||| | |||| |||||| || || || | |||||||| Sbjct 536 TGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGC 595 Query 153466 GCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACC 153524 || ||| |||| || || |||| ||| ||||| | ||||| ||||||||| Sbjct 596 GC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTG 654 Query 153525 ACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACG 153584 || || || || || | | || |||| ||| ||| ||||| | |||||| | | Sbjct 655 ACGACCTTGGTGATGTCGTAGAGCTTCTGGAAGTCAAAGGTCTTGTCGTCGGT-CACAAA 713 Query 153585 CATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTA 153643 | | || || || || ||||| || || || || || ||| |||| || || |||| Sbjct 714 CTTGGA--CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACG-TGTA 770 Query 153644 CTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT 153703 || | | |||| |||||||||||| | || ||| | || ||||| || Sbjct 771 CTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGA 830 Query 153704 TTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 ||||| ||||||| ||| ||| | ||||||||||| ||| ||||||| |||| || Sbjct 831 CTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTC 890 Query 153764 GACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCT 153820 || ||| |||| || | |||||| || | | || || ||||||||||| Sbjct 891 GAGGATCGCGAACC---AGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCG 947 Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGAC 153879 |||||| | | |||||| ||| ||||||||||| | | || | ||| || || Sbjct 948 CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGT-GTAGAGCCCCGGCG 1006 Query 153880 ACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGAT 153939 || | ||| || | ||| |||| ||| ||| | |||||| |||||| |||| Sbjct 1007 CCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGAT 1066 Query 153940 CCGGCACCCAGAGCGCGTACATGAGGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTT 153997 | || | ||| | |||||| | ||| | ||||||| |||| ||| ||| ||| Sbjct 1067 CGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCA--GCTCGTTGCCGTGGTT 1124 Query 153998 GCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCA 154056 || || | | | || | | |||||||||||||||| || || | ||| | || | Sbjct 1125 CTTCTTGAGGTCCAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGA 1183 Query 154057 GGGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGC 154113 | || || ||||| |||||||| ||||||| |||| || | | ||||||||| | Sbjct 1184 ACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACAC 1243 Query 154114 GCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGG 154173 ||| |||||| | |||||| | | | |||||| || ||| | | | | Sbjct 1244 GCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCG 1303 Query 154174 CGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGT 154233 |||| | | |||||| | ||||| |||||||| | |||| || ||| ||||| | Sbjct 1304 CGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACT 1363 Query 154234 CGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACG 154293 ||||| ||||||||| ||||| ||||| | | |||||| ||| |||| Sbjct 1364 GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACG 1423 Query 154294 AACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACA 154353 | ||| ||||| |||| ||||| || || || || |||||||||| || | Sbjct 1424 ACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGA 1483 Query 154354 GTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGC 154413 |||| ||| |||||| |||| ||| | || || || | ||| |||| Sbjct 1484 AGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGC 1543 Query 154414 CGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||| ||||| |||| | ||| ||||||||||| || ||||| Sbjct 1544 CGACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCGCGAC 1586 >seq7871 Length=1281 Score = 154 bits (170), Expect = 1e-32 Identities = 495/752 (66%), Gaps = 17/752 (2%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||| | |||||||||||||| | ||||| ||||| || ||| | ||||| | Sbjct 474 ACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCA 533 Query 52153 ACATTAACCTCATCGA-GTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || |||||| ||| | || | |||||| | || | || | ||||||| | || Sbjct 534 ACGAGAACCTCG-CGATGAACTTCAGCAGCG--AGGTGCAGGTCCCTGAGGCGCGTTGCT 590 Query 52210 TTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTG 52269 | ||| || || | ||| ||| | | ||| ||||| ||||| |||||||||| Sbjct 591 TCTATGGATTCCAGATCGCCATTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTG 650 Query 52270 AGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGC 52329 | | || || || || ||| || || || || ||||| | | | Sbjct 651 ACACGTACATCAAGGACCAGACTGAGAAGAACCACCTTCTCCGCGCCATCGAGACCATCC 710 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCACG 52388 ||||||| | || ||||| || ||||| | |||||| ||| ||| | | || | Sbjct 711 CGTGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGC-GCGGCT 769 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | || |||||||| || || ||||| |||||||| | || || || ||| || Sbjct 770 TTTGCTGAGCGCATCGTTGCGTTCGCTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTC 829 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 | ||||||| | | || | | || | ||||| ||||| | ||| |||||| Sbjct 830 TGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAG 889 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGC 52568 | || |||||||| || || || ||| ||||| ||||| || ||| || || Sbjct 890 CTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTCGCGTGTCTGCTGTACTCGAAGCTT 949 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628 || | | | ||| ||| || | || ||| | || || || ||||| Sbjct 950 GTCAACAAGCTCCCGGAGTCGCGCATCCACGAGATCATTCGC---GATGCTGTCGCTATT 1006 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || |||||||| | || | |||| ||||||||||| | ||||||||| || | | Sbjct 1007 GAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTCATCGGCATGAACTCGTCGCTC 1066 Query 52689 ATGTGCGAGTACATCGAGTT-TGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAA 52746 |||||| ||||||| ||||| |||| || |||| || | ||| || | ||||| Sbjct 1067 ATGTGCCAGTACATTGAGTTCTGTGCCG-ATCGCCTCCTCCACGCGCTTGGTGTCGCCAA 1125 Query 52747 AGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 | || ||| | ||| || ||||| || | ||| ||| || ||||| |||||||| Sbjct 1126 GAT-CTACAAGGTGTCG-AACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAG 1183 Query 52806 ACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||| ||||||||||| || |||||||| Sbjct 1184 ACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495886468825440