Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4160 127 2e-24 seq7871 87.8 2e-12 >seq4160 Length=1787 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 145974 GTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTT 146033 ||||||||| || || | ||| | || | |||||||| || || || | ||| Sbjct 66 GTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCC 125 Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 | || | ||| |||| ||||| |||| ||| || | | |||||||| ||||| || Sbjct 126 GAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCAC 185 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 ||| | |||| |||| | ||||||||||||| |||||||||||| ||||| ||||| Sbjct 186 GCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTG 245 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGT 146206 ||| |||| || || ||||| ||| | ||||| ||||| | |||||||| Sbjct 246 CGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGT 298 >seq7871 Length=1281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 245/365 (67%), Gaps = 21/365 (6%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| ||||||| || |||||||| |||||| | || || ||||| ||| | || Sbjct 863 ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCGAC 922 Query 47283 TTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAA-AAGTT---GGACGTGCCCAC 47335 || || ||||| |||| || || | |||| ||| | ||| || || Sbjct 923 TTCGCGTGTCTGCTGTACTCGAAG-CTTG------TCAACAAGCTCCCGGAGTCGCGCAT 975 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 | || ||| || || ||| || ||||| ||||||| |||||| || || | || Sbjct 976 C--CA-CGAGATCATTCGCGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGGACTCGCT 1032 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATT-TGTCG 47454 || | | | || |||||| || | | ||| | ||||||| || || ||| | Sbjct 1033 TCCGGTCGAGCTCATCGGCATGAACTCGTCGCTCATGTGCCAGTACATTGAGTTCTGT-G 1091 Query 47455 CCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTC 47513 |||| ||||| ||| ||| || || ||||||| ||| | ||| || ||| Sbjct 1092 CCGATCGCCTCCTCCACGCGCTTG-GTGTCGCCAAGATCTACAAGGTGTCGAACCCGTTC 1150 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573 || | ||| ||| || |||||| |||||||||||||||| |||||||||||||| ||| Sbjct 1151 GACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGC 1210 Query 47574 GAATA 47578 || || Sbjct 1211 GAGTA 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475140596256480