Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4160 239 6e-58 seq7871 199 5e-46 seq385 98.7 1e-15 >seq4160 Length=1787 Score = 239 bits (264), Expect = 6e-58 Identities = 938/1455 (64%), Gaps = 49/1455 (3%) Strand=Plus/Plus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| |||| || ||||| ||| || || | ||||| || ||||| ||| | Sbjct 134 TGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGT 193 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 || |||||||||||| | ||||| | |||| ||||| || | ||| || || || | Sbjct 194 TGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCG 253 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 | || || ||||| || || | || || |||||| | || | | | || Sbjct 254 ACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCG 313 Query 116021 CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCCACATATCAAACT 116077 ||||||| ||| ||||||| || | ||| | | ||||||| || |||| Sbjct 314 CCTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACT 373 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||| ||| || | | | | ||||| ||||| | | | || ||||| | || || Sbjct 374 GGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGCG 433 Query 116138 CCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 | | || ||| ||||| | ||| | |||| ||||| || ||| | Sbjct 434 CGAGCTCCATCGAG---GCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGT 490 Query 116195 TCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-ATAAATACATCCGC 116252 | | | |||||||||| || |||||| || | || | || || | ||||| Sbjct 491 TGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCC--CATGAGGATGAACGCGTCCGC 548 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 |||||| || || |||| ||| || ||||| || | || || | || ||| ||| Sbjct 549 GAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCGGCCTC 605 Query 116313 CACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 | || || | || | ||||| ||| | || || || ||||| ||||| || Sbjct 606 GGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGT 665 Query 116370 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 116429 ||| || | ||||| | | | ||||| | | || || | ||| |||| | || Sbjct 666 GATGTCGTAGAGCTTCTGGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTGGACAG 722 Query 116430 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 116489 ||||| ||||| || || ||||| | | |||||| |||||||| | | || Sbjct 723 CGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTC 782 Query 116490 CGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 || | || ||| || ||||| | ||||| || || ||||| ||| Sbjct 783 GCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 839 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 |||| |||||||| ||||| || ||||| || ||||| | || |||| ||| || || Sbjct 840 GCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGC 899 Query 116607 CTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTAC 116661 ||| | || |||| || | | | | ||| || || ||||| ||||||| Sbjct 900 GAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTAC 954 Query 116662 TTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATC 116720 | ||| || ||||| ||||| || ||| || | | | ||||||| || |||| | Sbjct 955 TGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCCTCGTT 1013 Query 116721 TGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780 || ||||| || ||| | || |||| || |||||||||||||| || ||||| Sbjct 1014 CGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGAT 1073 Query 116781 CCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCA 116839 ||| | ||| |||||||||| || ||| || || | | || || || | Sbjct 1074 CCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGA 1132 Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899 |||| || || | ||| || ||||||||||| |||||||||| ||||| || |||| Sbjct 1133 GGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCT 1192 Query 116900 TGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTG 116956 |||| | || |||||| || || | |||||| |||| || || || ||||| | Sbjct 1193 TGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACACGCAGCATGG 1252 Query 116957 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGAC 117014 | | || || | || ||| || || || || || ||||| ||| | || | || Sbjct 1253 GCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TTGGTCGCGCGGAT 1310 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 | ||| | | | || || || || |||||||| ||||| ||||||| | |||| Sbjct 1311 GTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAG 1370 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 || ||||||| || ||||||||||| |||| | |||| |||||||| ||||| Sbjct 1371 CGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAG 1430 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 || || | || || || |||||||| || || || |||||||| |||| | | ||| Sbjct 1431 CTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTG 1490 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||| | ||||| ||||| | | | | |||||| | | ||| || |||| | Sbjct 1491 CGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACGGC 1550 Query 117255 GACCCGCATAAACAT 117269 ||| |||| || ||| Sbjct 1551 GACACGCAGAATCAT 1565 >seq7871 Length=1281 Score = 199 bits (220), Expect = 5e-46 Identities = 402/586 (69%), Gaps = 14/586 (2%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 1222 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 1163 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGA 127343 ||||| | || || |||||| || | || ||||| || |||| | | || Sbjct 1162 GTCCATCCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCGACACCAAGCGCGTGGA 1104 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 |||| ||||| | | |||||||||||| |||| | |||||||| ||||||| Sbjct 1103 GGAGGCGATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGA 1044 Query 127404 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | | || |||| |||| || |||| |||||||||| | ||||| || || | || Sbjct 1043 GCTCGACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGA 984 Query 127464 TGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG--- 127520 | |||| || | | | || || || | | ||| ||| |||| | ||| Sbjct 983 TCTCGTGGAT-GCG-CGACTCCGGGAGCTTGTTGACAAG-CTTC--GAGTACAGCAGACA 929 Query 127521 --CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 | || || |||||| ||||| || || |||||||| || |||||||||| || || Sbjct 928 CGCGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCC 869 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 868 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGAT 809 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAA 127697 ||||| ||| |||||||||| | ||||| || |||| ||| | | | || Sbjct 808 ACCCTCGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGC 750 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||||||| | |||||| || ||||| |||| | || |||| ||||| ||| || | Sbjct 749 ACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGA 690 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 || | ||||| || | | || ||||||||| | || ||||| Sbjct 689 GAAGGTGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAATGAG 644 >seq385 Length=5345 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 176828 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 176887 || || ||||||||||| | ||||| ||||| || ||||| ||| | ||||| |||| Sbjct 2157 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 2098 Query 176888 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCC 176947 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 2097 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 2038 Query 176948 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 | |||||||||||| | ||| ||||| || || | || ||||| Sbjct 2037 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613042452958320