Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4160 141 1e-28 seq7871 136 6e-27 >seq4160 Length=1787 Score = 141 bits (156), Expect = 1e-28 Identities = 447/675 (66%), Gaps = 22/675 (3%) Strand=Plus/Plus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| ||||||||||| || ||||||||||||| |||| ||||| | || |||| Sbjct 819 CTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTC 878 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACG 205045 ||||| || ||| || || | ||| | | |||| | || ||||| || Sbjct 879 GATCTGCGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCG---CG 934 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACA-CGTC 205104 | |||| | | |||||| | |||||||||| | || || || || ||| Sbjct 935 CGCGGCCCTCGCG-CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTG 993 Query 205105 CATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCT 205164 | ||||| || | || || || | ||| |||| | | | | || | Sbjct 994 TAG-AGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCG 1052 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG-T 205223 || ||| || || ||| |||||||| |||| || |||||||| || | | | | | Sbjct 1053 CTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGG-TGCAGCT 1111 Query 205224 CGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCT 205282 ||| || ||||||| || | |||||| || || | |||||||||||||||||||| Sbjct 1112 CGTTGCCGTGGTTCTTCTTGAGGTCCAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCC 1170 Query 205283 AACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATC 205342 | ||| || | | ||| | |||| || |||||||| || ||| | | | Sbjct 1171 AGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTG 1230 Query 205343 GCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 ||||||| || |||||||| ||||| || ||||| | | |||||||||| | |||| Sbjct 1231 TCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATG 1290 Query 205403 GCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462 |||| || | | |||| | | |||| || ||||||| ||||||| | Sbjct 1291 TACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAG 1350 Query 205463 ATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 || ||||||| |||| || ||| ||||||||| |||| || |||||| || | Sbjct 1351 ATGCACGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGC 1409 Query 205522 CACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGG 205579 | ||| ||||||| | ||||| ||| | |||||||||| ||| ||||| || Sbjct 1410 GAGCAGGAAGCACGACGACAGCTGCGGGCGCGG--CGTGCCCGCGTTGAACAGCGTCGGC 1467 Query 205580 CTGGCGTGGCTGAAG 205594 | ||||| ||||| Sbjct 1468 GTCGCGTGCGTGAAG 1482 Score = 134 bits (148), Expect = 2e-26 Identities = 310/462 (67%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 204148 CCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCC 204207 ||| ||||| | | ||| |||||| || |||| ||| | |||| || || || Sbjct 117 CCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCC 176 Query 204208 GGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCC 204267 | ||||| | ||| || ||| |||| | ||||| || |||| || |||||||||||| Sbjct 177 AGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCC 236 Query 204268 GAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACC 204327 || ||||| || || ||||| ||||| || || || ||||| ||||||||||| || Sbjct 237 GAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCC 296 Query 204328 GTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCATCGCACTGGGTTTCAC 204384 ||| | ||| || ||| || | || |||||| | | || | || | || Sbjct 297 GTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGAC 356 Query 204385 GCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA 204444 |||||||||||||||||| |||||||| | || || || |||| ||| | || Sbjct 357 GCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTA 416 Query 204445 AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTC 204504 || | ||| || |||| |||||| |||||||| | |||||| ||||| Sbjct 417 CGGGCCGTGCTCCCGCGCGAGCTCCATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTC 476 Query 204505 AAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAAACGCCAGACCCAGCAT 204561 ||||| | | || | || || |||||| || || || ||||| |||| | Sbjct 477 GAAGATGTTCTTG-TTGAGCTCGCGGGCCTCGTCGCTC--TCGAACGCGTAGCCCATGAG 533 Query 204562 GGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 | ||| ||||||| | |||||||| ||||| || | ||| Sbjct 534 GATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGG 575 >seq7871 Length=1281 Score = 136 bits (150), Expect = 6e-27 Identities = 264/382 (69%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| || ||||| ||||||||||| || ||||| || || ||||||| |||||| || | Sbjct 938 ACAGCAGACACGCGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGA 879 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||||| |||||| |||||||| || |||| ||| || | | | Sbjct 878 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 820 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || ||||| ||||| || || || ||||| |||| | |||| |||||| || Sbjct 819 GAGAAGAAGATACCCTCGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGC---- 764 Query 160094 GTGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| ||| ||||| | |||||||| ||| | |||||| ||| Sbjct 763 GCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGC-ACGCACGGGATGG 705 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||||| |||| | | || || ||| || |||||||| || |||| | Sbjct 704 TCTCGATGGCGCGGAGAAGGTGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAATGA 645 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || |||||||| || | ||| | || || ||||| ||||| || ||||| | Sbjct 644 GCAGCGAGTACACCTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCATAGAAGCAAC 585 Query 160269 TCGCCTCCAGATACTGCACCTC 160290 |||||| | ||||||||| Sbjct 584 GCGCCTCAGGGACCTGCACCTC 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794552850057120