Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq35516 163 3e-35 seq4160 136 5e-27 seq7871 131 2e-25 seq385 95.1 1e-14 >seq35516 Length=479 Score = 163 bits (180), Expect = 3e-35 Identities = 293/422 (69%), Gaps = 17/422 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 438 AATTTGACGATCGAAACGACCGGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 379 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| |||||| || || | ||| |||| | || ||| |||||||| || ||| Sbjct 378 CGTACCGGCAAGCACAACCACGCC---CTCACTCGAGTTGAAGCCGTCCATCTCCACGAG 322 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTT------GGAGGGCATACCACCTGCCGA 11666 | |||||||| ||| | || ||||| ||||| |||| | | || | ||| Sbjct 321 CAACTGGTTGAGCGTGTTCTCTCGCTCGTCGTTACCACCGGAGAACGTTCC-CTTGCT-- 265 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 ||| | ||||||| || || ||||||||||| || || ||||| ||||||||| Sbjct 264 ACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGTTGGCACG 205 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| ||| || ||||| |||||| || || ||||| || |||||||| | ||| Sbjct 204 AGCCTCACGGAACAGATCACGCACACGCGACGGACCGACACCGACAAACATCTCGATGAA 145 Query 11787 GTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | | | || ||||| ||| || || ||| ||||| || | || |||| Sbjct 144 ATCCGAGCCCGAAATGCTGAA-GAACGGCACGCTAGCTTCACCGGCCGTCGCCTTCGCGA 86 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | || |||||||| ||||| || | ||| | || || || || ||||||||||||| Sbjct 85 GCAGCGTCTTACCAGTACCGGGGGGTCCAACTAGCAGCGCACCCTTCGGGATCTTGGCAC 26 Query 11906 CA 11907 || Sbjct 25 CA 24 >seq4160 Length=1787 Score = 136 bits (150), Expect = 5e-27 Identities = 537/832 (65%), Gaps = 17/832 (2%) Strand=Plus/Plus Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||| ||| ||||| ||| |||||| | ||||| || |||||||| || || || || Sbjct 816 GTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGT 875 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTT 110495 || |||| |||| ||| || || ||| | | | ||| || ||| || |||| Sbjct 876 CTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC- 933 Query 110496 AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATC 110555 ||| | || || |||||||| | ||||| |||| || || | || ||| || Sbjct 934 -GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCC--CACGTC 990 Query 110556 AGAAAGA--CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACC 110613 ||| ||| ||||| || || ||||| ||| ||| | || |||| || Sbjct 991 GTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACG 1050 Query 110614 CTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTC 110672 | ||||||||| || || || ||||||||||| |||| || ||||| || | || | Sbjct 1051 CGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC 1110 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| || |||| || || | ||| || | |||||| || || Sbjct 1111 -TCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTC 1169 Query 110733 GAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGT 110789 || || | |||| || ||||| || | || |||||| || ||||| || || Sbjct 1170 CAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGT 1229 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | | |||||||| | ||||| || | | || | || || || || || | || Sbjct 1230 GTCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGAT 1289 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 || || | || || |||| ||| | | || || || || |||||||| Sbjct 1290 GTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGA 1349 Query 110910 AATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGC 110969 || || |||| |||| || | || || || || ||||| || |||| |||| Sbjct 1350 GATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGC 1409 Query 110970 AATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGT 111029 | || ||||| || |||| ||| || || ||||| ||||| ||||| || || || || Sbjct 1410 GAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGT 1469 Query 111030 CGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATC 111089 ||| || |||| | | ||| ||||| | | ||| || ||||| |||| | | || Sbjct 1470 CGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTC 1529 Query 111090 TTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTTTCGATTAGCT 111148 | ||| || || | ||| || |||| | ||| | || || || | || | || Sbjct 1530 GTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCG-CGACCT 1588 Query 111149 TTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | || | || || | || || |||||| || ||||||| |||||||| Sbjct 1589 TGCCGCCGACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 1640 >seq7871 Length=1281 Score = 131 bits (144), Expect = 2e-25 Identities = 194/275 (71%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||||| || ||||||||||| || Sbjct 915 TGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCA 856 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||| ||||| ||| Sbjct 855 CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCGACAGCA 796 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 ||||| || | | ||||||||||||| | || || |||| |||||||||| Sbjct 795 GCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGCGCGA---GTCGCACCACTTGAGC 739 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||||| ||||| || | ||| |||| || | |||||| || ||| || ||| Sbjct 738 GCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAAGGTGGTTC 679 Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 || |||| ||||| || || | |||||||| Sbjct 678 TTCTCAGTCTGGTCCTTGATGTACGTGTCAATGAG 644 >seq385 Length=5345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 272/410 (66%), Gaps = 24/410 (6%) Strand=Plus/Minus Query 168205 ATCTTAAGAAGACTCGGCCAAAAGTAATGAATCATATTGAGAATGAGACCCTTGATATGG 168264 || || ||||| |||||| |||| |||||| | ||||| | ||||||||||| || Sbjct 2391 ATTTTCAGAAGGGACGGCCAGAAGTGATGAATAAAATTGATGACCAGACCCTTGATGTGA 2332 Query 168265 CTTCCATCATTATCTGCGTCTGTCATGATCATGAGACGACCATAACGAAG----TTCGGA 168320 || || |||| ||| |||| ||||||||| || | || ||||| || |||| Sbjct 2331 CTGCCGTCATGATCCTGATCTGCCATGATCATCAGGTGCCCGTAACGTAGACTCTTCGTT 2272 Query 168321 AACATCTTTGTACTCCTTTCCTTGTTGAAGTCCCAAAATTTTCTTGA-GATCATTGAA-C 168378 || | |||| | || || | |||||||| || ||| | | || |||| | Sbjct 2271 GAC----TCATACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACCAAGTTC--TGAATC 2218 Query 168379 TCCTGATTAGATGTCA-ACTGTGCCACCGATGAGTCCCT-CACGTTTTTACACT----TA 168432 |||| || ||| | | || | |||| || || |||| | || | | Sbjct 2217 TCCTCGTTCT---TCATAATTTGAGA---ATGACTCGCTTCACGAACATTCAATAGTTTG 2164 Query 168433 CCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCG 168492 || |||||||| || || |||| || | || || |||||||| ||| || ||| Sbjct 2163 CCCTTCAGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCG 2104 Query 168493 AGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCCGTA 168552 | || || ||||| || ||||| |||| ||||| || || ||| | || || ||| Sbjct 2103 AAGGTCTTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTA 2044 Query 168553 CCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGATCTTAGACTT 168602 ||||| | |||||||||||| | || || || || |||| ||| ||||| Sbjct 2043 CCAGCGTAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588529835955600