Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4160 212 7e-50 seq7871 152 6e-32 seq385 84.2 3e-11 >seq4160 Length=1787 Score = 212 bits (234), Expect = 7e-50 Identities = 573/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 805 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 864 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| || ||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 865 GGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 924 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 925 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 982 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 983 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 1041 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 1042 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 1101 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 106898 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 1102 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 1159 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 106955 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 1160 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 1219 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 ||||||| ||| |||| || || || ||||| || | | || | || || || | Sbjct 1220 AGCGCGCCGTGTCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 1279 Query 107016 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 | || || || ||||| || | || | | | || | | | || || || || Sbjct 1280 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 1337 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 1338 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 1397 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 1398 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 1457 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 1458 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 1517 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 | |||||||| | | ||||||||||| ||| ||||||| || ||| | || || Sbjct 1518 GGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACG 1577 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 ||| || |||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 1578 CTCCGCGACCTTGCCGCCGACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 1637 Query 107374 GTAACCAAAATCATAGTCCCG 107394 ||| | | ||| |||| || Sbjct 1638 GTAGTCGTACTCAAAGTCGCG 1658 >seq7871 Length=1281 Score = 152 bits (168), Expect = 6e-32 Identities = 389/579 (67%), Gaps = 20/579 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1215 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 1156 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 117104 |||| || || ||| | | || | || |||| || |||| | |||||| || Sbjct 1155 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 1097 Query 117105 ATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | |||| | ||||||||||| | |||| | |||||||| |||||||| | Sbjct 1096 ATCGG-CACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCGA 1038 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 || || | |||| || |||| | |||||||| | || || || | ||| ||| Sbjct 1037 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCTCGT 978 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTC-CACGGCA 117276 |||| | ||| || || | || ||| | || | ||| |||| | Sbjct 977 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAGCTTCGAGTACAGCAGACACG-CG 925 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || |||||| |||||||| || || || || || || ||||||| ||||| ||| Sbjct 924 AAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 865 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | || | |||||| || || ||||||||||||||| Sbjct 864 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCC 805 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGC-GAAGGAGCGAGACTTTGTGTCAAACCA 117455 || ||| || ||||||| | |||||| || ||| ||| | | | ||| |||| Sbjct 804 TCGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 746 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 || | ||||| | ||||||||||| | || || | || | |||||| | | Sbjct 745 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAAG 686 Query 117516 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 || ||||| |||| ||||| ||||| ||||||| Sbjct 685 GTGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAAT 647 >seq385 Length=5345 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 169371 AGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTT 169430 || ||||| || || || | ||||||||||| |||||||| || || || | ||| Sbjct 2157 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 2098 Query 169431 TTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCC 169490 || ||||| || ||||| || | |||||| || || ||| | | ||| ||||| || Sbjct 2097 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 2038 Query 169491 TTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 169534 | ||| || ||||| | ||| ||||| || || | || ||||| Sbjct 2037 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589533874794480