Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4160 300 3e-76 seq7871 203 6e-47 >seq4160 Length=1787 Score = 300 bits (332), Expect = 3e-76 Identities = 931/1412 (66%), Gaps = 43/1412 (3%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| || || | |||||| | | | ||| | ||| | ||| | || Sbjct 156 GTTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGG 215 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| || || ||||| ||||| || || ||||| || || | Sbjct 216 CTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAG 275 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCTGCCCAGTCCC 213087 ||| || ||| | ||| |||| || ||| | |||| ||| | |||||||||| Sbjct 276 CAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCT-CGCCTTGAGCGCGGCCCAGTCCC 334 Query 213088 ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGC 213147 | || ||| ||| ||| ||| ||||||||| ||||| |||||||| |||| Sbjct 335 AGAGACCCGAC--GTCGGCGTG----ACGCCCCACATGTCGAACTGGAAGATGCCCTTGC 388 Query 213148 TCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACG 213207 ||||||| |||| ||| | ||| ||||| |||||| || ||||| || | Sbjct 389 TCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGCGCGAGCTCCATCGAGG 448 Query 213208 CCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTG 213267 ||| || ||| | |||| | || || || || | | ||||||||| |||||| Sbjct 449 CCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGT 508 Query 213268 GGGACGTGAA-GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326 | | ||| | | | | |||| | |||| | || || || ||||| || |||||| Sbjct 509 CGCTCTCGAACGCGTAGC-CCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATG 567 Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCAC-TCCTC---CAAGGGGTAAAAGTT 213382 ||||| || | ||| | |||||| || | || | |||| | ||||| |||| Sbjct 568 CCGATCGGGCGGTGGCGCAGGTT--GCT--GCGCTCGGCCTCGGGGATCGGGTAGTAGTT 623 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | |||||||| |||||| |||||||| ||| | || ||||||| | | || | || Sbjct 624 GATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCT- 682 Query 213443 GTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 | | | || | || |||| |||||||| | ||| |||||| || ||||| Sbjct 683 GGAAGTCAA-AGGT-CTTGTCGTCGGTCACAAACTTGGACAGCGCGATGGACGCGAGGTT 740 Query 213503 GCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 ||| || || ||||| | | | | | |||||||| | | |||| ||| |||||||| Sbjct 741 GCACACCGCGACCTCATCGGGCGAC-GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCG 799 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGC 213620 | ||||| ||||| |||||||| ||||| ||| ||||| | ||| || |||||||| ||| Sbjct 800 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGAC-TTGCGGTTGCACGAGTCCTTGTACAGC 858 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||||| || | || ||||| | ||| ||| | || ||| | |||||| | | || Sbjct 859 ATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCG 918 Query 213681 TTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738 || || || | || | ||| | | || ||||||||| | ||| ||| | | || Sbjct 919 CGGA----TCGTCTTGC-GCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGA 973 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCTCCAG 213797 | |||| |||||| | ||| || ||||| | | |||| || | |||||||| Sbjct 974 ACTCGTCGCCCCACGTCGTGTAGAGCCCCGGCGCCTCGTTCGGG-CAGAACAGGCTCCAC 1032 Query 213798 TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 || |||| | ||| | || |||||| || || |||| ||||| |||| ||| || Sbjct 1033 TCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGA 1092 Query 213858 TCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || | | | | ||||| || ||| || || || || || || ||| Sbjct 1093 TCACGCGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAG 1149 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCC 213971 ||||| |||||||||||||||| ||| || || || | |||| | ||| ||||||| Sbjct 1150 ATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCC 1209 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 ||||| || | ||| |||||||| ||||| | ||| || || ||||| ||| Sbjct 1210 TGGTCGACGTAGCGCGCCGTGTCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGAC 1269 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCT 214091 ||||| || || || |||||| || || | | |||| || | || || Sbjct 1270 GAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCG 1329 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 ||||| || || |||||||||| ||||| || | | || || |||||| | Sbjct 1330 ATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCG 1389 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 || ||| || | | | |||| |||||| ||| ||||| || | | || ||| Sbjct 1390 ATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCC 1449 Query 214212 GAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTC 214271 | |||||| ||||| || | || || | | || | | || | | | ||| ||| Sbjct 1450 GCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTC 1509 Query 214272 TCCAGGACTGAGGGGATGTCGTGCTTGTGGAT 214303 || || | | | ||||||||||||||||| Sbjct 1510 TCGAGCGCGGCGTCAATGTCGTGCTTGTGGAT 1541 >seq7871 Length=1281 Score = 203 bits (224), Expect = 6e-47 Identities = 558/845 (66%), Gaps = 25/845 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 1216 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 1157 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | | || | | | || ||| | Sbjct 1156 CCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCGACACCAAGCGCGTGGAGGAGGCG 1097 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--GAC 48019 ||| || | |||| ||||| | ||||||| | ||||||||| ||||| ||| Sbjct 1096 ATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCGAC 1037 Query 48020 ACGG--GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| || | ||| || ||||||||||| || || || || | | |||| Sbjct 1036 -CGGAAGCGAGTCCTG---GACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCT 981 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | | ||| ||||| | | | |||||| || ||| | || |||| || || | Sbjct 980 CGTGGATGCGCGACTCCGGGAGCTTGTTGACAAG---CTTCGAGTACAGCAGACACGCGA 924 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | ||| || || || ||||||| |||| ||||||| ||| ||||||| Sbjct 923 AGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 864 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || | ||| ||||| ||||||||||| |||| Sbjct 863 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCT 804 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCC 48314 | || || |||||||| || | ||| | |||| || | | ||| | || Sbjct 803 CGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGCGCGAGTC---GCACC 747 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | |||||||||| |||||||||| | ||| || || ||||| ||||| |||| | Sbjct 746 ACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAA 687 Query 48375 GCTTCTTGCACTCA-CCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 | | || |||| ||| |||| | || || | |||||||| | ||||| | Sbjct 686 GGTGGTTCTTCTCAGTCTG-GTCCTTGATGTACGTGTCAATGAGCAGC---GAGTACACC 631 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| || |||||| | |||||| ||| Sbjct 630 TCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCATAGAAGCAACGCGCCTCAGGGACC 571 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || || ||| || | || ||||| ||||| || || || || || Sbjct 570 TGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCG 511 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 || || || ||||| || || | || ||||||||||||| ||||| |||| || Sbjct 510 AAAAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAGGTTGCCCCAGTCC 451 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | ||| | | || || | || || | ||||||||| ||| || || ||| Sbjct 450 TTGAGGTCATGCACGAGATCGATCTCCTCGGCGGTCCAGAAGCTCGCCTCAGCCTTCTTG 391 Query 48671 TACAT 48675 ||||| Sbjct 390 TACAT 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930827140615680