Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7871 190 4e-43 seq4160 165 2e-35 >seq7871 Length=1281 Score = 190 bits (210), Expect = 4e-43 Identities = 557/851 (65%), Gaps = 27/851 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| ||||||||||||||||| | | || |||||||||||| ||||| ||||| Sbjct 380 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTT---CTGGACCGCCGAGGAGATCGATCTC 436 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| | || | | |||||| || ||| ||||| || Sbjct 437 GTGCATGACCTCAAGGACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCAC 496 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATT 25655 || | || || || || || || ||||| || |||||||| || |||| || || Sbjct 497 GTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTC-GCGATGAACTT 555 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 || ||| || |||||| | ||||| || ||||| || |||||||| ||||| || Sbjct 556 CAGCAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATTGA 615 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 || | ||||| |||||||| | ||| || || |||||||| | ||| | Sbjct 616 GAACATCCACTCGGAGGTGTACTC---GCTGCTCATTGACACGTACATCAAGGACCAGAC 672 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| | | || | | ||||||||| ||| || || | ||| |||||||| Sbjct 673 TGAGAAGAACCACCTTCTCCGCGCCATCGAGACCATCCCGTGCGTGCAGAAGAAGGCGCA 732 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | |||||| | || | |||| | |||| ||||| | || || || Sbjct 733 CTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATCGTTGCGTT 792 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 |||||||| ||||| ||||| ||| || ||||| ||| ||||||||||||||||| Sbjct 793 CGCTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTCTGCT-CCATCTTCTGGCTCAAGA 851 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || || ||| || |||||||||||| | || ||||| | Sbjct 852 AGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCC 911 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 ||||| | || || || || ||||| ||| | | |||| || |||| | || | | Sbjct 912 TCCACTGCGACTTCGCGTGTCTGCTGTACTC--GAAGCTTG-TCAACAAGC--TC-CCGG 965 Query 26072 AGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | | || || ||||| || ||||| | || ||||||||||| Sbjct 966 AGTCGCGCATCCACGAGATCATTCGCGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGG 1025 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG- 26187 | ||||||||| |||||| |||| ||||||||| Sbjct 1026 ACTCGCTTCCGGTCGAGCTCATCGGCATGAACTCGTCGCTCATGTGCCAGTACATTGAGT 1085 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247 | ||| ||||| | || || | ||| || |||||| |||||| | | ||| Sbjct 1086 TCTGT-GCCGATCGCCTCCTCCACGCGCTTGGTGTCGCCAAGATCTACAAGGTGTCGAAC 1144 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 |||||||||| ||||| | || ||| | | || |||||||||||||| || ||| | Sbjct 1145 CCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGC 1204 Query 26308 GTCGGCGACTA 26318 || ||||| || Sbjct 1205 GTGGGCGAGTA 1215 >seq4160 Length=1787 Score = 165 bits (182), Expect = 2e-35 Identities = 582/893 (65%), Gaps = 27/893 (3%) Strand=Plus/Plus Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 ||||||||||| | ||| || || |||| | || || |||||||| ||| | | Sbjct 787 CAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAG 846 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||| ||||| | || ||| ||||| | ||| | | | || ||| | |||| Sbjct 847 TCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAG 906 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGT 221943 || | ||| |||| | |||| ||| || | ||||| || | ||| | Sbjct 907 AGCTG-CTGCGCGCGGATCGTC---TTGCGCGCGCGGCCCTCGCGCT---CGTACTGGTG 959 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG--CGGGA 222001 || ||| || |||| || || ||| | || || || || | ||| | |||| Sbjct 960 GTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAGAGCCCCGG-CGCCTCGTTCGGG- 1017 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 || | ||| ||||| | |||| | | ||| | || ||||||||| || ||||||||| Sbjct 1018 CAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCAC 1077 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | ||| | |||||||| | | || ||| ||| ||||| ||| ||| | || ||| Sbjct 1078 ATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCC 1137 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | ||||| || ||||| ||||||||||||||||| || | || | | ||| ||| Sbjct 1138 AGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGC 1197 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||| ||| ||||| || || | | || ||||||||| || || | || || Sbjct 1198 TTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACACGCAGCATGGGCACG 1257 Query 222242 AGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TA 222298 || ||||| || ||| ||||| ||||| ||||||| | || | | || | Sbjct 1258 AGGCCGTTCGA-CGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTG 1316 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | || ||| |||||| || || || || ||||| ||||| |||||| ||| Sbjct 1317 CACGCTGAC--GCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 1374 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| || ||||| ||||| | | ||||| || || ||||||| ||| Sbjct 1375 TCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGC 1434 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | | ||||| |||||||| || | ||||| || ||| ||| ||| Sbjct 1435 GGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGAC 1494 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCAT 222538 || ||||||||||| | | | | |||| || | ||| || | |||| Sbjct 1495 ATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACA 1554 Query 222539 CTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTAC 222595 | || ||| | ||| || | |||| | || ||||| || | ||| || ||| Sbjct 1555 CGCAGAATCATCTGCTGCGGACGCTCCGC--GA-CCTTGCCGCCGACGCGGAGGAGATAC 1611 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 || || || || |||||||| |||||||||| | |||||||| | | |||| Sbjct 1612 GACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTG 1664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928141176842880