Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4160 183 4e-41 seq7871 152 6e-32 seq385 87.8 2e-12 >seq4160 Length=1787 Score = 183 bits (202), Expect = 4e-41 Identities = 570/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| ||||| | || Sbjct 1658 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTCCTCCGC 1599 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| |||| || ||| || ||| | ||| | |||| ||||| |||||||| Sbjct 1598 GTCGGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATC 1539 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | |||||||| | | | ||||| ||||| | ||||| ||| | | ||| Sbjct 1538 CACAAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 1479 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 1478 ACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGC 1419 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||| | || || | | |||| Sbjct 1418 TTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGC 1359 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| ||||||||||| || || || | | | || | | | || | Sbjct 1358 GCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACC 1299 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || || || || || | || | | || ||||| || | Sbjct 1298 AA--CTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGTG 1241 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCG 75602 | || |||| ||| |||||||| || | || |||| ||| |||||||| || ||| Sbjct 1240 TCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCG 1181 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAAC 75661 || | ||| |||| || ||||| ||||| ||| | |||||||| || | | || ||| Sbjct 1180 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGA-AGAAC 1122 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || ||| || || | | | | |||||||| | | ||||||| || || || Sbjct 1121 CACGGCAACG-AGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCT 1063 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| || | ||| || ||||| || || |||| || Sbjct 1062 CTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCC 1003 Query 75781 AGGTCTCTCCGACG-CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 || |||| | ||| || ||| || ||||| || || || ||| |||| || | Sbjct 1002 GGGGCTCTAC-ACGACGTGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCG 944 Query 75840 AGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||| | || ||| ||| | | | |||| || | ||| || || ||| | Sbjct 943 AGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGA 889 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || |||| ||||| || || || || ||||| |||||||| | || ||| ||| Sbjct 888 GTCGCAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTC 829 Query 75955 TAACCAAAAGAATTTGGGAACAATC 75979 ||||| |||| | || || ||| Sbjct 828 GAACCAGCAGAACCTCGGCACGATC 804 >seq7871 Length=1281 Score = 152 bits (168), Expect = 6e-32 Identities = 389/579 (67%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||| |||| ||||| || | | |||||| | || Sbjct 647 ATTGACACGTACATCAAGGACCAGACTGAGAAGAACCACCTTCTCCGCGCCATCGAGACC 706 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 | || || | ||||||||||| | ||||| | || |||| ||| | | | ||| Sbjct 707 ATCCCGTGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCGCGC 765 Query 65068 TCCTTC-GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| || |||||| | ||||||| || ||| ||||||||||||||||| || || Sbjct 766 GGCTTTTGCTGAGCGCATCGTTGCGTTCGCTGCTGTCGAGGGTATCTTCTTCTCGGGCTC 825 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| ||||||||||| ||||| ||||||| || Sbjct 826 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 885 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCT--TCAA 65243 || || || || || |||||||| |||||| || || | |||| ||| | || | Sbjct 886 CGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTCG-CGTGTCTGCTGTACTCGA 944 Query 65244 GACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGG 65299 ||| || | || || ||| | ||||||| ||| | || || | Sbjct 945 AGCTT---GTCA---ACAAGCTCCCGGAGTCGCGCATCCACGAGATCATTCGCGATGCTG 998 Query 65300 TTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACT 65359 | | |||||||| | |||| || |||| | || || | |||||||| ||||||| Sbjct 999 TCGCTATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTCATCGGCATGAACT 1058 Query 65360 CTGAGAAGATGTCCGAGTACATTGAG-TATGTGTCGGATCGTCTCCTCAAACAAGTTGGG 65418 | | |||| | ||||||||||| | |||| | ||||| |||||| | |||| Sbjct 1059 CGTCGCTCATGTGCCAGTACATTGAGTTCTGTG-CCGATCGCCTCCTCCACGCGCTTGGT 1117 Query 65419 GT-GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 || |||| || | || | | ||| || || |||| ||||| | || || | Sbjct 1118 GTCGCCA-AGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCA 1176 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||||||||| |||||||| || || || || Sbjct 1177 GGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1215 >seq385 Length=5345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/398 (66%), Gaps = 30/398 (8%) Strand=Plus/Plus Query 13538 AAGTCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAA 13597 ||||| || | ||||| ||||| ||| | || || |||||| | || ||||| || | Sbjct 1994 AAGTCGAAGCTCACCGGAATTCCGAAGCTCGACGATGCGAACTACGCTGGTACAGCGAAG 2053 Query 13598 TCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCG 13657 | ||| || || |||||| | || ||||| || || || || ||| |||| | Sbjct 2054 GGTCAAAACTGCACGCTCATTTTGACTGAGGGCGAATCAGCCAAGACCTTCGCAATCAGT 2113 Query 13658 GGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAG 13717 || ||||| || ||||| ||||| | ||||||||||| ||||| || ||| | Sbjct 2114 GGACTCTCCGTTGTTGGACGTGACTATTACGGTGTGTTTCCACTGAAGGGCAAACTATTG 2173 Query 13718 AATGTTCGGGACGCTTCGGTGGCACAGCTCACATCA-----AACCAGGAG-TTCAACGAT 13771 |||||||| || || | | || |||| || | ||| ||||| |||| || Sbjct 2174 AATGTTCGTGAAGC----GAGTCA-TTCTCAAATTATGAAGAACGAGGAGATTCA--GAA 2226 Query 13772 C-TCAAGAAGATCCTTGGTCT--------TCAACAAGGAAAAGACTACCAAGATGTTTCT 13822 | | ||||||| | || || | ||||| | || | || |||| || Sbjct 2227 CTTGGTGAAGATCTTGGGACTCAAGCACGGCCACAAGTATGAGTCAACGAAGA-GT---- 2281 Query 13823 GAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATC 13882 || || || || | || ||||| ||| ||||| ||| |||| || ||||||| Sbjct 2282 ---CTACGTTACGGGCACCTGATGATCATGGCAGATCAGGATCATGACGGCAGTCACATC 2338 Query 13883 AAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCC 13920 |||||||| || | ||| | || || |||||||||| Sbjct 2339 AAGGGTCTGGTCATCAATTTTATTCATCACTTCTGGCC 2376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596117683613760