Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4160 558 4e-154 seq7871 161 1e-34 >seq4160 Length=1787 Score = 558 bits (618), Expect = 4e-154 Identities = 1112/1621 (69%), Gaps = 57/1621 (4%) Strand=Plus/Plus Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||||||||||||| ||| | ||||| ||||||| ||| ||| | | | ||| Sbjct 69 CTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAG 128 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 |||||| || || | || || |||| ||||| | | |||||||| ||||||||||| Sbjct 129 CTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCACGCG 188 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || |||| |||| |||| ||||| || | ||||||||||||||| | |||||||| Sbjct 189 GCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGC 248 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 |||| ||||| ||||| ||| | ||||||||||||||||| ||| | | Sbjct 249 AGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGAC 308 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTC 148468 | ||| || || |||||||||||||| || || ||| || ||| ||||||||| Sbjct 309 GCTCGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTC 368 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 | |||| | ||||| ||| |||| |||||||| || |||||| |||||| | Sbjct 369 GAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTC 428 Query 148529 CGCCGCCAGTTCGCAGCTCG-CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 | ||| || || || | | |||| | ||||| |||| | ||||||| || | | Sbjct 429 CCGCGCGAGCTC-CATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCT 487 Query 148588 TGTTGAGCAGCGCCGCCGAC-TCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTC 148645 |||||||| ||| | | | ||||| ||| ||| | || | || | | |||||||| Sbjct 488 TGTTGAGCT-CGCGGGCCTCGTCGCTCTCGAACG-CGTAGCCCATGAGGATGAACGCGTC 545 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 || || ||||| ||||| | ||| || || ||||| | |||| | ||| || Sbjct 546 CGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTG---CGCTCGGC 602 Query 148706 CTCGAG---CGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT 148762 |||| | ||| |||| |||| |||||||| ||||| || |||||| || ||||| Sbjct 603 CTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTT 662 Query 148763 TGTAATTCTGCGCAGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTT 148816 || || | ||| || ||||| || |||||| || | | | Sbjct 663 GGTGATGTCGTAGAGCTTCTGGAAGTCAAAG--GT-CTTGTCGTCGGTCACAAACTTGGA 719 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| || || || |||||||| || |||||| || | ||||||| | | Sbjct 720 CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCAC 779 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 |||| ||| || ||||| | |||| ||| | ||||| || || ||||| ||| Sbjct 780 CTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 839 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT--- 148993 ||||| ||||||||||||||||||||| ||| || || | ||||| || | || Sbjct 840 GCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGC 899 Query 148994 GAACCGATGCAGGTCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATA 149052 ||||| || | ||||||||| | | | ||| || ||| ||||| ||||||| Sbjct 900 GAACCAGAGCTG---CTGCGCGCGGATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACT 955 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGA---CCGGGGCACTTGT 149109 |||||| ||||||| | ||||| | |||| ||| |||| || || || Sbjct 956 GGTGGTACAGCGCCTCGAACTCGTCGCCCCACG--TCGTGTAGAGCCCCGGCGC-CTCGT 1012 Query 149110 GCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCA 149169 |||||| | || |||| |||||| || | ||||||||||| || |||||||| | Sbjct 1013 TCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGA 1072 Query 149170 CCCAGAGCGCGTACATGAGGTC--GCGCGCCTTGCAG-TCTTCGGCGCC---CATGTTGC 149223 ||| | |||||| | ||| || |||||| ||||| || | | || | | ||| Sbjct 1073 TCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGA 1132 Query 149224 GGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCG 149283 || |||| || | ||| ||||| |||||||||||||| | ||||| ||||| || Sbjct 1133 GGTCCAGGA-----ACTC-GAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACG 1186 Query 149284 CGCCCTTGCGCTTGCCGCC---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAA 149340 |||||||||||||||||| ||||||||||| |||| || ||| ||| || || || | Sbjct 1187 AGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACACGCA 1246 Query 149341 CCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGC 149398 ||| || | | ||| | | | |||||| || || ||| ||| | ||||| Sbjct 1247 GCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGC 1306 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458 | | ||||||||| |||||||||||||||| | |||| |||||| |||||| | Sbjct 1307 --GGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTG 1364 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 |||||| ||||||||||||||| |||| |||||||| ||||| |||||||| Sbjct 1365 CTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGA 1424 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 ||| ||||| ||||||| || ||||| || || | ||||| || || | Sbjct 1425 CGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAA 1484 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 | || ||| |||||||| ||||||| || ||| ||||| | |||||||| Sbjct 1485 GCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCC 1544 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | |||||| |||| | ||| |||||||| |||||||| || ||| || | ||| Sbjct 1545 GACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCGCGACCTTGCCGCCGACGCGGAG 1604 Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 | || || || || |||||| |||||||||| | ||| |||||||||||| |||| Sbjct 1605 GAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTG 1664 Query 149759 G 149759 | Sbjct 1665 G 1665 >seq7871 Length=1281 Score = 161 bits (178), Expect = 1e-34 Identities = 509/769 (66%), Gaps = 21/769 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| | ||| || ||| ||| Sbjct 1216 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 1157 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAA-CTGTACGAGCAGTC 120472 | ||||||||||| | | || || || | ||| |||| | ||| || | Sbjct 1156 CCAGTCGAACGGGTTCGACACCTTGTAG-ATCTTGGCGACACCAAGCGCGTGGAGGAGGC 1098 Query 120473 GGTCCGCTACA-AACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 | || || ||| ||||||||||||| ||||||| | || ||||||||| | | | | Sbjct 1097 GATCGGC-ACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCG 1039 Query 120532 ACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCG 120591 ||||| | || | || |||||||||||||| | || || || | || || Sbjct 1038 ACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCTCG 979 Query 120592 AGCATAGTGTGGC-CGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | || | | | | | || | ||||| | | || |||| ||| ||| ||||| | Sbjct 978 TGGAT-GCGCGACTCCGGGAGCTTGT-TGACAAGC---TTCGAGTACAGCAGACACGCGA 924 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||| |||||||| |||||||| || |||||||| || | ||||| |||| Sbjct 923 AGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 864 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | || |||||| ||||| | |||| Sbjct 863 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCT 804 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGC-CGTCTTGCTGTCGATCCAC 120828 | || || || || || |||||||| || || | ||| || | | |||| |||| Sbjct 803 CGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGCGCG-AGTCGCACCAC 745 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 || | ||||| | ||||| || |||||||||| || ||||| ||| || || Sbjct 744 TTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAAGG 685 Query 120889 ATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTG 120948 || ||| || ||| || | | |||||||| ||||| |||| | Sbjct 684 TGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAG 625 Query 120949 TGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCTCCAGCTCGGGC 121005 || | | ||| || || | |||| || ||| | ||||||| | | || Sbjct 624 TGGATGTTCTCAAT-GGCGAT--CTGGAATCCATAGAAGCAACGCGCCTCAGGGACCTGC 568 Query 121006 ACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAA 121064 ||| | | |||| | | ||| ||||| || ||||||| |||| || ||||| Sbjct 567 ACCTCGCTGCTGAAGTTCATCG-CGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCGAA 509 Query 121065 GAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 ||||| || ||||||||||||||||| ||||||| ||||||||| ||| Sbjct 508 AAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAGGTTG 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483054596658480