Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4160 109 6e-19 seq43746 84.2 2e-11 >seq4160 Length=1787 Score = 109 bits (120), Expect = 6e-19 Identities = 914/1450 (63%), Gaps = 71/1450 (5%) Strand=Plus/Minus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 |||||| || || || ||| | |||| || || || ||||| ||| | ||||| Sbjct 1584 CGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCACGACAT 1525 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTT 7666 ||||||||| | || |||||| | ||||| | || || || |||||||| Sbjct 1524 TGACGCCGCGCTCGAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGA 1469 Query 7667 CGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT-CAATTGTCCTCGTGTTTTTTGCTA 7725 |||| || |||| ||||||||| |||||| || |||| ||||| || |||| Sbjct 1468 CGCCGACGCTGTTCAACGCGGGCACGC-CGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 1410 Query 7726 ACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATT 7785 ||||| || ||| ||||| ||||| ||| ||||||| | ||||| || Sbjct 1409 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATC 1350 Query 7786 TCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC---CAACG-GTAG 7841 ||||| | | ||||| || || | | ||| || || | ||||| |||| ||| Sbjct 1349 TCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACCAACTCGTA- 1291 Query 7842 CCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAA 7901 |||| ||| ||||| | | ||| | | ||||||| |||| || ||||| Sbjct 1290 ---CATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGTGTCTTCAA 1234 Query 7902 TAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTA 7958 || ||| ||| | || |||||||| || |||||||| ||| | || || || Sbjct 1233 CGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTA 1174 Query 7959 TTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGC-GTCGCAACATGGGTT 8017 |||||||||||||||| ||||| | || | || | || | | | || || Sbjct 1173 CCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGG--- 1117 Query 8018 GCGAAGA-CAGCAAAGCGCGCG--ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTA 8074 | | || | ||| ||||||| |||| |||| || ||||| | |||||||| || | Sbjct 1116 -CAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCA 1058 Query 8075 TGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTAT 8134 ||| |||||| | | ||| | ||| || | ||||| || || || | Sbjct 1057 TGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCC-GAACGAGGCGCCGGGG 999 Query 8135 ---TAAAAAACGTTTACGGTTCAA--AATTTGAACAATTGTACAAACAATACGAACACGA 8189 || | |||| || | | | || || ||||| | || ||||| | ||| Sbjct 998 CTCTACACGACGT----GGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGA 943 Query 8190 CGGCGCGTACGTGCGGCAAGTGAAAGCGCGCG-ACCTGCACCG---CGCCATTATCGAAT 8245 ||| || || ||| |||| | |||||| | | || | | ||| || |||| | Sbjct 942 GGGC-CG--CGCGCG-CAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGT 887 Query 8246 GTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCA 8305 || | ||| || || | |||||||||||||||||| ||| | |||||| ||| | Sbjct 886 CGCAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGA 827 Query 8306 ATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACA 8365 | || ||| | ||||| || | | ||||| || ||| || | | |||||| Sbjct 826 ACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACA 767 Query 8366 GCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TGTTTAAACGCGTTC 8421 ||||||| || || || || ||||| || ||||| | ||| || ||| Sbjct 766 CGTCGCCCGATGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAA----GTTT 711 Query 8422 GTTGATCGACGCTCAAACACTTACGACTTT--GAA-CAATTGAAAAACGCCGTGCAAGTG 8478 || || ||||| | || || ||||| ||| | | | | | || | || Sbjct 710 GT-GACCGACGACAAGACCTTT--GACTTCCAGAAGCTCTACGACATCACCAAGGTCGTC 654 Query 8479 ACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC-GCG 8537 ||| ||||| | | |||| || |||| | || || | || || | | Sbjct 653 ACG---CGCAACCTGAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAG 597 Query 8538 CGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTT 8597 || | | ||| |||||||| | || | ||| | |||||||| ||||| || |||||||| Sbjct 596 CGCAGC-AACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTT 538 Query 8598 TGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGC 8657 | | || || | | | ||| ||| | || || ||| |||||||| || || Sbjct 537 CATCCTCATGGGCTACGCGTTCGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTT 478 Query 8658 GGAAACGGTGTATTACGGCGCATTAGAAGCCA-GCTGTCAACTTGCCCGAGAATTGGGCA 8716 || ||| |||| | ||||| | || ||| | || | || || || || ||| Sbjct 477 CGAGACGCTGTACTTTGGCGCCATGGAGGCCTCGATGG-AGCTCGCGCGGGAGCACGGCC 419 Query 8717 CGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGA 8776 |||||| |||| ||| || | ||| || || || || | |||||||||| Sbjct 418 CGTACGGCAGCTACGAGGGTTCGCCCGTGAGCAAGGGCATCTTCCAGTTCGACATGTGGG 359 Query 8777 ATGTCACGCCCACCTC---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAAT 8833 |||||||| || || | | ||| | ||| || | || | | || || | Sbjct 358 GCGTCACGCCGACGTCGGGTCTCTGGGACTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGT 299 Query 8834 TCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAA 8893 ||| ||||||| |||||| || | || ||||| || || ||||||| || || Sbjct 298 ACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACTGCGCAGATCC 239 Query 8894 TGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGG 8953 | || |||||||| || | ||||||||||| | |||| ||||| | || ||| | | Sbjct 238 TCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCG 179 Query 8954 CCGGCGATTT 8963 | ||||| || Sbjct 178 CTGGCGAGTT 169 >seq43746 Length=404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| || |||| | Sbjct 301 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 360 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATC 134599 ||| |||||||| ||||| || || |||| ||||||||||| Sbjct 361 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505015548077040