Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4160 203 4e-47 seq7871 138 1e-27 seq385 86.0 8e-12 >seq4160 Length=1787 Score = 203 bits (224), Expect = 4e-47 Identities = 571/861 (66%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 805 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 864 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| || ||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 865 GGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 924 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 925 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 982 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 983 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 1041 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 1042 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 1101 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 1102 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 1159 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 111728 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 1160 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 1219 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 ||||||| ||| |||| || || || ||||| || | | || | || || || | Sbjct 1220 AGCGCGCCGTGTCGTTGAAGACACGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 1279 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | | || || || || Sbjct 1280 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 1337 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 1338 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 1397 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 1398 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 1457 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 1458 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 1517 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | |||||||| | | ||||||||||| ||||| |||| | ||| | ||| || Sbjct 1518 GGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACG 1577 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 ||| || |||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 1578 CTCCGCGACCTTGCCGCCGACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 1637 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 1638 GTAGTCGTACTCAAAGTCGCG 1658 >seq7871 Length=1281 Score = 138 bits (152), Expect = 1e-27 Identities = 386/579 (67%), Gaps = 20/579 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1215 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 1156 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 122489 |||| || || ||| | | || | || |||| || |||| | |||||| || Sbjct 1155 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 1097 Query 122490 ATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | |||| | ||||||||||| | |||| | |||||||| |||||||| | Sbjct 1096 ATCGG-CACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCGA 1038 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 || || | |||| || |||| | |||||||| | || || || | ||| ||| Sbjct 1037 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCTCGT 978 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTC-CACGGCA 122661 |||| | ||| || || | || ||| | || | ||| |||| | Sbjct 977 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAGCTTCGAGTACAGCAGACACG-CG 925 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||| |||||||| || || || || || || ||||||| || || ||| Sbjct 924 AAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 865 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | || | |||||| || || ||||||||||||||| Sbjct 864 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCC 805 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGCGAGACTTTGCATCAAACCA 122840 || ||| || ||||||| | ||| || || ||| ||| | | | || |||| Sbjct 804 TCGACAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 746 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 || | ||||| | ||||||||||| | || || | || | |||||| | | Sbjct 745 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAAG 686 Query 122901 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 || ||||| |||| ||||| ||||| ||||||| Sbjct 685 GTGGTTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAAT 647 >seq385 Length=5345 Score = 86.0 bits (94), Expect = 8e-12 Identities = 259/395 (66%), Gaps = 24/395 (6%) Strand=Plus/Minus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||||||| || || | ||| | || ||||||||||||||| || |||| ||| Sbjct 2376 GGCCAGAAGTGATGAATAAAATTGATGACCAGACCCTTGATGTGACTGCCGTCATGATCC 2317 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTT 182606 ||||| ||| ||||| || | || || || || || |||| || | || | Sbjct 2316 TGATCTGCCATGATCATCAGGTGCCCGTAACGTAG-------AC-TCTTCGTTGACTCAT 2265 Query 182607 CCTTGTTGA--------AGACCAAGGATCTTCTTGA-GATCATTGAA-CTCCTGGTTTGA 182656 ||||| | || || | ||||||| | | || |||| ||||| ||| Sbjct 2264 ACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACCAAGTTC--TGAATCTCCTCGTTCTT 2207 Query 182657 TGTAAGCTGTGCCACCGAAGCG--TCCCGAACATTCTTACATTTACCGCGAAGTGGGAAC 182714 ||| || | | || || || ||||||||| ||| || ||||| ||| Sbjct 2206 CATAATTTGAG--AATGACTCGCTTCACGAACATTCAATAGTTTGCCCTTCAGTGGAAAC 2149 Query 182715 ACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAA 182774 |||||||| | ||||| ||||| || ||||| || | |||| ||| || || || Sbjct 2148 ACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTCTTGGCTGAT 2089 Query 182775 TCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCG 182834 || ||||| || | |||||| || || ||| | | || ||||| || | |||||| Sbjct 2088 TCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCGTAGTTCGCA 2029 Query 182835 TCATCCAACTTGGGAATACCGGTAATTTTGGACTT 182869 || || | ||| ||||| ||||| | || ||||| Sbjct 2028 TCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627556250059200