Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4160 262 5e-65 seq7871 206 3e-48 seq385 93.3 5e-14 >seq4160 Length=1787 Score = 262 bits (290), Expect = 5e-65 Identities = 691/1040 (66%), Gaps = 36/1040 (3%) Strand=Plus/Plus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 ||||||||||| || || |||| ||| || ||||| || | || || | || || Sbjct 544 TCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCG 600 Query 118587 GTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 118643 | ||| | || || | || | ||||| ||| | || || || ||||| ||| Sbjct 601 GCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACC 660 Query 118644 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 118703 || ||||| || | ||||| | | | ||||| | | || || | ||| |||| Sbjct 661 TTGGTGATGTCGTAGAGCTTCTGGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTG 717 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 | || ||||| ||||| || || ||||| | | |||||| |||||||| | Sbjct 718 GACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGC 777 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 | || ||| | ||| ||| || ||||| | ||||| || || ||||| Sbjct 778 ACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 834 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880 ||| |||| |||||||| |||||||| ||||| || ||||| | || |||| ||| Sbjct 835 CGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGG 894 Query 118881 ATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCT 118935 || || ||||| || |||| || | | | | ||| || || ||||| || Sbjct 895 ATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCT 949 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCC 118994 |||||| ||| || || || ||||| || ||| ||| | | | ||||||| || ||| Sbjct 950 CGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCC 1008 Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 119054 | | |||||||| || ||| | || |||| || |||||||||||||| || Sbjct 1009 TCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCG 1068 Query 119055 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAG 119113 |||||||| | ||| |||||||||| || ||| || || | | || || || Sbjct 1069 GGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTT 1127 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | |||| || || | ||| || ||||||||||| |||||||||| ||||| || Sbjct 1128 CTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGA 1187 Query 119174 CCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 ||||| || | || |||||| || || | ||| ||| |||| || ||||| || Sbjct 1188 GCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACACGCAG 1247 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCT 119288 ||| || | || || | || ||| || || || || || ||||| || | || Sbjct 1248 CATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TTGGTCGCG 1305 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 | || | ||| | | | || || || || |||||||| ||||| |||||||| | Sbjct 1306 CGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGC 1365 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 |||| || ||||||| || ||||||||||| |||| | |||| |||||||| | Sbjct 1366 TTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGAC 1425 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468 |||| || || | || || || |||||||| || || || |||||||| |||| | Sbjct 1426 GACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAG 1485 Query 119469 CCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 | ||| ||||| | ||||| ||||| | ||||| |||||| | | ||| || ||| Sbjct 1486 CTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCG 1545 Query 119529 ATCGAGACCCGCATAAACAT 119548 | | ||| |||| || ||| Sbjct 1546 ACGGCGACACGCAGAATCAT 1565 >seq7871 Length=1281 Score = 206 bits (228), Expect = 3e-48 Identities = 399/578 (69%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 1215 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 1156 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC-ACTCCAATCTGTTTGAGGAGACG 129846 | || || |||||| || | || |||| || |||| | | |||||| || Sbjct 1155 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 1097 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | |||||||||||| |||| | |||||||| |||||||| | Sbjct 1096 ATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATGAGCTCGAC 1037 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||| |||| || |||| |||||||||| | ||||| || || | ||| |||| Sbjct 1036 CGGAAGCGAGTCCTGGACGAACTCCTTCTCAATAGCGACAGCATCGCGAATGATCTCGTG 977 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACT 130022 ||| | ||||| | || | | ||| | || | | || |||| | || | Sbjct 976 GATGCGCGACTCCGGG--AGCT-TGTTGACAAGCTTCGAGTACAGCAGACACG-CGAAGT 921 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | |||||| ||||| || || |||||||| || |||||||||| || || ||||||| Sbjct 920 CGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGA 861 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||| | |||||| || | || || ||||| ||||||||||| ||||| | Sbjct 860 GACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCGA 801 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || |||||||||| || |||||||| |||| ||| | | | || ||||||| Sbjct 800 CAGCAGCGAACGCAACGATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCACTTG 742 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | |||||| |||||||| |||| | ||||||| ||||| ||| || | || | Sbjct 741 AGCGCCCAGTGCGCCTTCTTCTGCACGCACGGGATGGTCTCGATGGCGCGGAGAAGGTGG 682 Query 130262 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 ||||| || | | || ||||||||| | || ||||| Sbjct 681 TTCTTCTCAGTCTGGTCCTTGATGTACGTGTCAATGAG 644 >seq385 Length=5345 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 179965 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 180024 || || ||||||||||| | ||||| ||||| || ||||| ||| | ||||| |||| Sbjct 2157 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 2098 Query 180025 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCC 180084 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 2097 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 2038 Query 180085 TTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 180128 | |||||| ||||| | ||| ||||| || || | || ||||| Sbjct 2037 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617966719875120