Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4160 183 4e-41 seq7871 163 3e-35 seq18018 89.7 6e-13 >seq4160 Length=1787 Score = 183 bits (202), Expect = 4e-41 Identities = 684/1057 (65%), Gaps = 28/1057 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | |||| || ||| |||| || || | | |||||||| | | Sbjct 1574 CCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCACGACATTGACGCCGCG 1515 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || ||| Sbjct 1514 CTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTC 1455 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| |||||| ||||| ||| Sbjct 1454 AACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGAC 1395 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | |||| ||| ||||| ||||||||||| Sbjct 1394 TCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGC 1335 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACAA 104519 || || || | | | || | | | || | || |||||| | || || || | Sbjct 1334 GGCATCGGCGTCAGCGTGCACAACATCCGCGCGACCAA--CTCGTACATCCGCGGCACGA 1277 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | || ||||| || || || |||| ||| |||||||| | Sbjct 1276 ACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGTGTCTTCAACGACACGGCGCGCTACG 1217 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| || |||| | || || ||||| ||||||| Sbjct 1216 TCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTACCTGGAGCCGTGGCACG 1157 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 | || ||| | |||||||| || | ||||| || ||||| | | | | || Sbjct 1156 CCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGCG 1098 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || |||||||||| ||| | ||||| || ||||||||||||||| | || |||| | Sbjct 1097 CGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCATGAAGCGCGTCGAGGCCAAC 1038 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTGA 104814 ||| | ||| || || || || || |||| || || |||| | | | ||| ||| || Sbjct 1037 GGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGGCTCTAC-ACGACGTGGGGCGA 979 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 ||||| || || || ||| |||||||| || || || ||| |||| | | Sbjct 978 CGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCCG 919 Query 104875 AGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || || | | | ||| || || ||| |||| || | |||||| || || || |||| Sbjct 918 CGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACAGGCACGCCGTACA 860 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT---CA 104990 |||| ||||| ||| | || |||| ||| || || |||| | || ||| | Sbjct 859 TGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCT 800 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 ||| ||| ||||| || | | || | || |||||| || |||| Sbjct 799 CGAG---CAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCCGATGAGGTCGCGGTGT 743 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | |||||||| || ||||| || |||||| |||| || ||| ||||| ||||| | Sbjct 742 GCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG--ACCGACGAC-AAGACCTTTGACT 686 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || ||| |||| | || || ||||| ||||| |||| || || || | Sbjct 685 TCCAGAAGCTCTACGACATCACCAAGGTCGTCACGCGCAACCTGAACAAGGTCATCGACA 626 Query 105171 GAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || | ||||| | ||| | | || | || || | ||||| || || | Sbjct 625 TCAACTACTACCCGATCCCCGAGGCCGAGCGCA---GCAACCTGCGCCACCGCCCGATCG 569 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 | |||| || |||||||||||||| | ||||| || Sbjct 568 GCATCGGCGTGCAGGGTCTCGCGGACGCGTTCATCCT 532 >seq7871 Length=1281 Score = 163 bits (180), Expect = 3e-35 Identities = 202/274 (74%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| |||||||||| || || | |||||| | Sbjct 644 CTCATTGACACGTACATCAAGGACCAGACTGAGAAGAACCACCTTCTCCGCGCCATCGAG 703 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | ||||| | || ||||| ||| | ||||| | ||||||| || | | || Sbjct 704 ACCATCCCGTGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCG 762 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || |||| |||||||| || | || || || ||| ||||||||||||||||| || Sbjct 763 CGCGGCTTTTGCTGAGCGCATCGTTGCGTTCGCTGCTGTCGAGGGTATCTTCTTCTCGGG 822 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| | || | |||||||||||||| ||||||||||| || ||| ||||||| Sbjct 823 CTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTC 882 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| ||||| || || ||||| |||||| Sbjct 883 GAACGAGCTCATCTCGCGCGATGAGGGCCTCCAC 916 >seq18018 Length=781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || ||||| || |||||||| ||||| | || || |||||||| | ||| |||||||| Sbjct 178 TTGCCACGCAGCGGGAAGACGCCGTACTTGTCGCGTCCAACGACCGCGAGTCCCGCGACG 119 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 ||||| | ||| ||||||||||| || |||| ||| | || ||| Sbjct 118 GCGAGCGCCTTGGCCGAGTCACCTTCCGTGAGGATCAACGCACA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582818965362480