Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4160 333 3e-86 seq38184 165 9e-36 seq38185 159 4e-34 seq7871 116 4e-21 seq35002 102 9e-17 >seq4160 Length=1787 Score = 333 bits (368), Expect = 3e-86 Identities = 911/1378 (66%), Gaps = 32/1378 (2%) Strand=Plus/Plus Query 80301 CGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTC 80360 |||||||| || |||| | || || |||| |||| |||||| | || ||||| Sbjct 114 CGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTC 173 Query 80361 TCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTT 80420 || ||||| ||| || |||| ||| || ||| | ||||| | | ||||||||| Sbjct 174 GCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTT 233 Query 80421 TCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAG 80480 ||||||||||| || || ||||||||||||||| ||| || ||| || || |||| Sbjct 234 GCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCAC 293 Query 80481 GCCGTGCTTCTTGA---TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAA--CGC 80533 ||||| || | || | ||| | ||| | | || | | |||| | || Sbjct 294 GCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAG---ACCCGACGTCGG 350 Query 80534 TGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGT 80591 ||||| ||||||||||| ||| |||||||||| | | || || ||| || | | Sbjct 351 CGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCT 410 Query 80592 CTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGTGATA 80648 |||||||||| | | | || ||||| ||| |||||| ||| | || Sbjct 411 GCCGTACGGGCCGTGCTCCCGCGCGAGCTCCATCGAGGCCTCCAT---GGCGCCAAAGTA 467 Query 80649 AATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAACGACAAGC 80707 | ||| |||| | |||||| | |||| |||| || | || ||||||| ||| Sbjct 468 CAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTC-TCGAACGCGTAGC 526 Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 |||| | |||||| |||| || || ||||| ||||||||| ||||||||||||||||| Sbjct 527 CCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCA 586 Query 80768 TGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 ||| ||||||||||| || || ||||| |||| | |||||||| |||||||| Sbjct 587 GGTTGCTGCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGT 646 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGTTCCCCT 80884 |||| || || ||| || | || | || ||||| ||||| || | || | Sbjct 647 TGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTGGAAGTCAAAGGTCTTGTCGTCGG 706 Query 80885 TCACAAATGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 ||||||| ||| || | | |||||| || |||||||| || ||||| || | Sbjct 707 TCACAAA-CTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGAC 765 Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 || |||||| | || ||| | || || || || || ||||| | |||| Sbjct 766 GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGG 825 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || |||||| |||||| | ||||||||| ||||||||| || || ||||||| ||| Sbjct 826 TTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGC 885 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 |||| |||||| ||| ||| | || |||| || | |||||| ||| ||| Sbjct 886 GACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCG 945 Query 81124 GCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT-GAGGTCTG 81181 | | |||| | ||| ||| | ||||||| | | || | || || ||| | | Sbjct 946 CGCTCGTACTGGTGGTACAGC-GCCTCGAACTCGTCGCC-CCACGTCGTGTAGAGCCCCG 1003 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| ||||| | |||| ||| ||| || | ||| || ||||||||| Sbjct 1004 GCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGA 1063 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 || |||||||| | ||| ||| || || || ||| | ||| | || |||| Sbjct 1064 GATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGT 1123 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | | || || || || | |||||| || ||||| |||||||| |||| |||| Sbjct 1124 TCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGA 1183 Query 81362 TCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACAC 81418 ||| |||||||| | ||| ||||||| |||||| || || || |||| || |||| Sbjct 1184 ACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACAC 1243 Query 81419 GCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGG 81478 ||| ||| || | || || | ||| |||||||| || ||| ||| | | Sbjct 1244 GCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCG 1303 Query 81479 CGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACC 81538 |||| | ||| | | |||||||| || | |||||| || || || ||| Sbjct 1304 CGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACT 1363 Query 81539 GGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGC 81598 | || | || || || || |||||||| || | |||||| | |||| ||| || Sbjct 1364 GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACG 1423 Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 |||| ||| |||| | ||| || |||||||| || || |||||||| |||| Sbjct 1424 ACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAA 1481 >seq38184 Length=452 Score = 165 bits (182), Expect = 9e-36 Identities = 202/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| |||||||| ||| ||||||||||||||| | | ||| || || ||| || Sbjct 121 GTGGTCGACGGCCTGAAGGTCTCACAGCGCAAGGTGCTGTTCGCGTGTCTGAAGCGCAAG 180 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | |||||| ||| ||||| || || | Sbjct 181 CTGACGAAGGAAGTCAAGGTCGCGCAGCTCGCTGGCTAC--TGCAGTGAGCACACAGCGT 238 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || || |||||| | || ||| ||| |||| Sbjct 239 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATCGTCAACATGGCGCAGGACTACGTCG 298 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 | || || |||||| | ||| | ||||| ||||||||||| || ||||| || | Sbjct 299 GCGCCAACAACCTGCCGCTGCTCTATCCATCGGGACAGTTTGGCACGCGGCTGCAGGGAG 358 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || ||||| | || ||||||||||| Sbjct 359 GCAAGGACGCCGCGAGTCCGCGCTACATCTTCAC 392 >seq38185 Length=452 Score = 159 bits (176), Expect = 4e-34 Identities = 201/274 (73%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| |||||| | ||| || |||||||||||| | | ||| ||||| ||| || Sbjct 121 GTGGTCGACGGCTTGAAGGTCTCGCAGCGCAAGGTGCTCTTCGCGTGCCTGAAGCGCAAG 180 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | |||||| ||| ||||| || || | Sbjct 181 CTGACGAAGGAAGTCAAGGTCGCGCAGCTCGCTGGCTAC--TGCAGTGAGCACACAGCGT 238 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || || |||||| | || ||| ||| |||| Sbjct 239 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATCGTCAACATGGCGCAGGACTACGTCG 298 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 | || || |||||| | ||| | ||||| ||||||||||| || ||||| || | Sbjct 299 GCGCCAACAACCTGCCGCTGCTCTATCCATCGGGACAGTTTGGCACGCGGCTGCAGGGAG 358 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || ||||| | || ||||||||||| Sbjct 359 GCAAGGACGCCGCGAGTCCGCGCTACATCTTCAC 392 >seq7871 Length=1281 Score = 116 bits (128), Expect = 4e-21 Identities = 355/541 (66%), Gaps = 7/541 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || || |||||||| | ||||||| | ||||||| Sbjct 378 TGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCG 437 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || |||| ||||||| ||||| | | ||| || | ||||| |||||| Sbjct 438 TGCATGACCTCAAGGACTGGGGCAACCTCA-CGGACAACGAGCGCCACTTTATCAAGCAC 496 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 ||||| || || ||||| | || ||||| || || ||||| | | | || || Sbjct 497 GTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTTC 556 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | | || || ||| |||| |||||||| | ||||||| | ||| | || Sbjct 557 AGCAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATTGAG 616 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTC-GA 64616 | || || ||| ||| ||||| | ||||||| || | ||| || | | || Sbjct 617 AACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGA-CCAGACTGA 675 Query 64617 GAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATG 64676 |||| | || || | || || ||||| | || || || ||||| | || Sbjct 676 GAAGAACCACCTTCTCCGCGCCATCGAGACCATCCCGTGCGTGCAGAAGAAGGCGCACTG 735 Query 64677 GGCCATCCGGTGGAT-GAATCGTG--GGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGC 64733 ||| || |||| || ||| | | || | |||| | |||| ||| || || || Sbjct 736 GGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATCGTTGCGTTCGC 795 Query 64734 CTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCG 64793 ||| || || || ||||| || || || ||||| || || |||||||| || ||||| Sbjct 796 TGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCG 855 Query 64794 GGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCA 64853 || || ||||| || || || ||||||||||| ||||| || || ||||| ||||| Sbjct 856 TGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCA 915 Query 64854 C 64854 | Sbjct 916 C 916 >seq35002 Length=485 Score = 102 bits (112), Expect = 9e-17 Identities = 255/385 (66%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 24723 TTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAG 24782 |||||||||||| || || ||| | | ||||| ||||||| ||||| ||| ||| Sbjct 25 TTTTATCAGGCGTCGACCAGCGAGCTCTACGGCAAAGTGCAGGCCACGCCGCAGAACGAG 84 Query 24783 ACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATA 24842 ||| || ||||| ||||| || || || ||| | ||| ||| |||||||||| Sbjct 85 CTCACGCCGTTTTACCCGCGCTCGCCCTACGGTGTCGCCAAGCAGTTTGCGTACTGGAGC 144 Query 24843 ACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCAT 24902 | ||||||||| ||||| | || || | ||| ||||| || || |||||||| Sbjct 145 GTCGTGAACTACCGCGAGGCGTACGGCATGTTTGCCGTGAACGGCATCCTCTTCAACCAC 204 Query 24903 GAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATTACTCTTGGTATTGACCAT 24962 ||| ||| || ||||| ||||| || || |||||||| | | | | | Sbjct 205 GAGAGCCCGCGACGCGGACCGACGTTTGTGACGCGCAAGATTACGCGCGCGGTCGTAC-- 262 Query 24963 TGGATCAAGACAAGGGCACC---TATTG-----AGCTGGGAAACCTAGATGCCAAACGTG 25014 | |||| ||| |||| | |||| | | || ||||| || || || || | Sbjct 263 -GCATCA--ACACTGGCATCGAGGATTGTCTGTACATTGGCAACCTCGAGGCAAAGCGCG 319 Query 25015 ATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGC 25074 | ||||| || ||| |||||| ||||| ||||||| ||||| || || | | | Sbjct 320 ACTGGGGCCACGCACGCGACTATGTCGAGTGCATGTGGAAGATGCTGCAGCACGACACTC 379 Query 25075 CAGAGGATTTTGTGATCGGCACCGG 25099 | ||||| || || ||| ||| || Sbjct 380 CCGAGGACTTCGTCGTCGCCACTGG 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569878375614240