Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq46689 120 2e-22 seq22547 116 3e-21 seq22503 116 3e-21 seq394 82.4 6e-11 >seq46689 Length=383 Score = 120 bits (132), Expect = 2e-22 Identities = 211/305 (69%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || || || | |||||||||| ||| ||||| || | ||||| Sbjct 55 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 114 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 | ||||| || | ||||| ||||| || || || | ||| | || | |||| Sbjct 115 ATGAACTCGCCAGCGCGCAGCCCTGTGACCTGCGCGATGAGTCGCGTCAACAGCGCGTAG 174 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 || |||||||| || || || ||||| ||||| || | || | ||||| | |||||| Sbjct 175 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 234 Query 30044 GAGAGCTCTCCGT-CGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||||| || | ||| ||||||||||| || | ||||||||| || || ||||| Sbjct 235 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATGTGGCACGGCGGCAGCGCCAT 293 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30162 | ||| |||||||| || ||| ||||||||||| || | ||||| | Sbjct 294 CTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTTCGT 353 Query 30163 CCTGA 30167 | ||| Sbjct 354 CTTGA 358 >seq22547 Length=674 Score = 116 bits (128), Expect = 3e-21 Identities = 191/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 |||||||| || ||| || |||||||| || ||| |||||||| || || || Sbjct 46 AGCTGATCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCACCAAAG 105 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||||||||| || ||||| ||||| || || || |||| | || ||| ||| Sbjct 106 TGGCGCCACTGGAAGCCATACACTGGTCCGAGATCGCCAGCTTCGCGATGTCCGAGGCCG 165 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT-CAGA 30366 | | || | | || | || || ||| | ||||||||||| | ||||| | | | Sbjct 166 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 225 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 | || |||| || || || |||| ||||||||||||||||||| |||| | Sbjct 226 AATGTC-TTGGCATTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACCGCG 284 Query 30427 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 ||| ||||| | |||||||||||| || ||||| Sbjct 285 CCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 317 >seq22503 Length=674 Score = 116 bits (128), Expect = 3e-21 Identities = 191/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 ||||| || || ||| || |||||||| || ||| |||||||| ||||| || Sbjct 629 AGCTGGTCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCTCCAAAG 570 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||||||||| || ||||| ||||| || || || |||| | || ||| ||| Sbjct 569 TGGCGCCACTGGAAGCCATACACTGGTCCAAGATCGCCAGCTTCGCGATGTCCGAGGCCG 510 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA-GA 30366 | | || | | || | || || ||| | ||||||||||| | ||||| || | Sbjct 509 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 450 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 | |||| | | || || || |||| ||||||||||||||||||| |||| | Sbjct 449 AATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACCGCG 391 Query 30427 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 ||| ||||| | |||||||||||| || ||||| Sbjct 390 CCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 358 >seq394 Length=5308 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 3555 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 3612 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCA 52878 ||| | ||||||||||||||| ||| || | ||||| || ||||| |||||||| | Sbjct 3613 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGTCTGCCCCGATCTCATCATGA 3672 Query 52879 ACCCCCACGCCTTTCC 52894 |||| |||| ||| || Sbjct 3673 ACCCGCACGGCTTCCC 3688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406010304471384