Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq37667 152 1e-31 seq58713 113 1e-19 seq1236 100 7e-16 seq60364 98.7 2e-15 >seq37667 Length=458 Score = 152 bits (168), Expect = 1e-31 Identities = 210/287 (73%), Gaps = 5/287 (2%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 165 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 224 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTT-TACAAC 7563 | | |||||||| || ||| |||||| || | |||||| | | || || || Sbjct 225 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTA-TGGTAAACCACCATTTATATAAT 283 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTA-TGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 ||| || |||| || ||||| || | | |||||||||| | |||||||| || | || Sbjct 284 GTTGTTGTTACTGCACATGCTTTCCTAAATGATTTTCTTCATGGTTATGCCTATTTTAAT 343 Query 7623 A-GGCGGTTTCGGAAATTGA-TTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || ||||| || || || || || ||||||||||| |||||||| |||||||| ||| Sbjct 344 TTGGAGGTTTTGGTAACTGGGTTTGTACCTTTAATGATAGGTGCTCCAGATATGGCGTTT 403 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || | || ||||| |||||||| ||| |||| || || ||||| Sbjct 404 CCTAGAATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 450 >seq58713 Length=310 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 163 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 221 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 222 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 265 >seq1236 Length=3297 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||| |||| | | ||||||||| ||||||| ||| | || || | || ||| Sbjct 3064 AATGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATGTTATAAATGGTTGAAAGAAAA 3123 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||||| | |||||||||||| || |||||||| Sbjct 3124 TTAATAGCACCTAATAATGATGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCT 3183 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 3184 ACTGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACCT 3240 Query 371542 GT 371543 || Sbjct 3241 GT 3242 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || ||||| |||||||||||||| || | | |||||| ||||| || || Sbjct 2886 TTCAGGGTGTCCGAAAAACCAGAATAAATGTTGGTATAATACAGGATCACCTCCACCAGA 2945 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| | || |||||| ||||||||||||||||| |||| Sbjct 2946 AGGATCATAGAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 2989 >seq60364 Length=301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| |||||||||| | |||| |||||||||||||||||||| ||||||||| || Sbjct 71 GCTCCATATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGAAAACATGCTGTA 130 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 131 ATTTTTTATGATGATTTATCTAAACAA 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191605243497788