Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq46689 125 6e-24 seq22547 89.7 4e-13 seq22503 89.7 4e-13 seq394 84.2 2e-11 >seq46689 Length=383 Score = 125 bits (138), Expect = 6e-24 Identities = 215/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| | | | || || || || ||||| ||||||| ||| || || || | |||||| Sbjct 55 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 114 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 | ||||| || | ||||| ||||| || || || | ||| | || | |||| Sbjct 115 ATGAACTCGCCAGCGCGCAGCCCTGTGACCTGCGCGATGAGTCGCGTCAACAGCGCGTAG 174 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 || |||||||| || ||||| ||||| ||||| || |||| | ||||| | ||| || Sbjct 175 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 234 Query 29816 GAGAGCTCTCCGT-CGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGC 29871 |||||||| || | ||| ||||||||||| | ||||| |||||||| || || || Sbjct 235 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATG---TGGCACGGCGGCAGCGC 290 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| | ||| |||||||| || ||| ||||||||||| || | ||||| Sbjct 291 CATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTT 350 Query 29932 GTTCCTGA 29939 || ||| Sbjct 351 CGTCTTGA 358 >seq22547 Length=674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||||||||| || ||||| ||||| || || || |||| | || ||| | Sbjct 103 AAGTGGCGCCACTGGAAGCCATACACTGGTCCGAGATCGCCAGCTTCGCGATGTCCGAGG 162 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | | || | | || | || || ||| | ||||||||||| | ||||| || Sbjct 163 CCGATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCC 222 Query 30137 -GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 | | |||| | | || || || |||| ||||||||||||||||||| |||| | Sbjct 223 TGCAATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACC 281 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 ||| ||||| | |||||||||||| || ||||| Sbjct 282 GCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 317 >seq22503 Length=674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||||||||| || ||||| ||||| || || || |||| | || ||| | Sbjct 572 AAGTGGCGCCACTGGAAGCCATACACTGGTCCAAGATCGCCAGCTTCGCGATGTCCGAGG 513 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | | || | | || | || || ||| | ||||||||||| | ||||| || Sbjct 512 CCGATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCC 453 Query 30137 -GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 | | |||| | | || || || |||| ||||||||||||||||||| |||| | Sbjct 452 TGCAATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACC 394 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 ||| ||||| | |||||||||||| || ||||| Sbjct 393 GCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 358 >seq394 Length=5308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 53525 CCAGAGATGGGCGACAAGTTT-GCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGGT 53583 || ||||| ||||||||||| ||| | |||||| || ||||| ||||| || | Sbjct 3555 CCCGAGATCGGCGACAAGTTCAGCAGTCGCCACGGC-CAGAAGGGCGTGTGCGGCACGAT 3613 Query 53584 CCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAA 53643 || | |||||||||||||| ||| || | ||||| || ||||| |||||||| || Sbjct 3614 CCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGTCTGCCCCGATCTCATCATGAA 3673 Query 53644 CCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||| |||| ||| || | | |||||||| Sbjct 3674 CCCGCACGGCTTCCCGAGCCGCATGACGGT 3703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405863213191372