Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq46689 132 4e-26 seq22547 107 1e-18 seq22503 107 1e-18 >seq46689 Length=383 Score = 132 bits (146), Expect = 4e-26 Identities = 214/305 (70%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| || || || || || |||||||||| ||| ||||| || | |||||| Sbjct 55 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 114 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 | ||||| || | ||||| ||||| || || || | ||| | || | |||| Sbjct 115 ATGAACTCGCCAGCGCGCAGCCCTGTGACCTGCGCGATGAGTCGCGTCAACAGCGCGTAG 174 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 || |||||||| || || || ||||| ||||| || | || | ||||| | |||||| Sbjct 175 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 234 Query 27310 GAGAGCTCTCCAT-CGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 |||||||| |||| ||| ||||||||||| || | ||||||||| || || ||||| Sbjct 235 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATGTGGCACGGCGGCAGCGCCAT 293 Query 27369 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 27428 | ||| |||||||| || ||| ||||||||||| || | ||||| | Sbjct 294 CTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTTCGT 353 Query 27429 CCTGA 27433 | ||| Sbjct 354 CTTGA 358 >seq22547 Length=674 Score = 107 bits (118), Expect = 1e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 |||||||| || ||| || |||||||| | ||| |||||||| || || || Sbjct 46 AGCTGATCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCACCAAAG 105 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 || | ||| ||||| || ||||| ||||| || || || |||| | || ||| ||| Sbjct 106 TGGCGCCACTGGAAGCCATACACTGGTCCGAGATCGCCAGCTTCGCGATGTCCGAGGCCG 165 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG-GA 27632 | | || | | || | || || ||| | ||||||||||| | ||||| || | Sbjct 166 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 225 Query 27633 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 | |||| | | || || || |||| ||||||||||||||||||| |||| | Sbjct 226 AATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACCGCG 284 Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||| ||||| | |||||||||||| || ||||| Sbjct 285 CCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 317 >seq22503 Length=674 Score = 107 bits (118), Expect = 1e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 ||||| || || ||| || |||||||| | ||| |||||||| ||||| || Sbjct 629 AGCTGGTCGACTCCCTGGCCAGAGTAGTCGGCGTGCATCGTCGTGTACTTGGCTCCAAAG 570 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 || | ||| ||||| || ||||| ||||| || || || |||| | || ||| ||| Sbjct 569 TGGCGCCACTGGAAGCCATACACTGGTCCAAGATCGCCAGCTTCGCGATGTCCGAGGCCG 510 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG-GA 27632 | | || | | || | || || ||| | ||||||||||| | ||||| || | Sbjct 509 ATGCTCTCTAGGTATTCCTTCGATCCATTGCCATCCCAGATCTTGATACCCTTGTCCTGC 450 Query 27633 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 | |||| | | || || || |||| ||||||||||||||||||| |||| | Sbjct 449 AATGTCTTGGCA-TTGGTATCGCCACTGATGAACCACAGCAGCTCCTCCGCGACACCGCG 391 Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||| ||||| | |||||||||||| || ||||| Sbjct 390 CCAGAAGACGCGCTTGGTCGTGAGCAGCGGAAA 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369234286831862