Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7871 143 6e-29 seq2345 122 2e-22 seq38185 109 1e-18 seq38184 105 1e-17 seq36561 93.3 9e-14 seq43746 89.7 1e-12 seq42683 89.7 1e-12 >seq7871 Length=1281 Score = 143 bits (158), Expect = 6e-29 Identities = 556/860 (65%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 229560 TGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGGACCACGGAGGAAGTCCCCCTAAAT 229619 ||| | ||||| |||||||| | ||| | ||| |||||| | ||||| || || | Sbjct 380 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCG-T 438 Query 229620 GCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGACGATGAACGCCATTTCATCAAGCA 229678 ||| ||| || |||||| || || |||| ||| | || ||||| || |||||||| Sbjct 439 GCATGACCTCAAGGACTGGGGC---AACCTCACGGACAACGAGCGCCACTTTATCAAGCA 495 Query 229679 CATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGTGATGGAAAACTTGCAGACTAACTT 229738 | | |||| |||||| || | |||||||||||| | || ||| | || ||||| Sbjct 496 CGTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTT 555 Query 229739 CAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTTTTACGCATACCAGACGTTCAATGA 229798 |||| ||| || |||||| ||||| || || || | || ||||| || ||| Sbjct 556 CAGCAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATTGA 615 Query 229799 ATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGACGCGCTCATTTCCGACGAGCGAGA 229858 | || ||||| ||| | || || |||||| || ||| ||| || || Sbjct 616 GAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACTGA 675 Query 229859 GCGTGCCGAACTGTTCGACGCCATCGAAAACATCCCGGCGGTCCATAACAAAGCGCGTTG 229918 | | | || || ||||||||| | ||||||| || || || || |||| || Sbjct 676 GAAGAACCACCTTCTCCGCGCCATCGAGACCATCCCGTGCGTGCAGAAGAAGGCGCACTG 735 Query 229919 GGCTCAGAAGTGGCTGGA---ACCCAGTAAATCGTTTGCAGAGCGTCTCGTCGCGTGGGT 229975 ||| | |||||| || | | | | ||||| ||||| |||| |||| | Sbjct 736 GGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATCGTTGCGTTCG- 794 Query 229976 GTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCTACGCAACA 230034 ||| || |||||||| | ||||| || |||||| ||||||| ||||| ||| | Sbjct 795 CTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCT---CAAGA 851 Query 230035 AG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACGAATTCATCAGCAGGGACGAAGGTC 230091 || || ||||||| || ||| | | |||||||| ||||| | || || || | Sbjct 852 AGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCC 911 Query 230092 TTCACCAGCAATTTGGCGAGGTCT--TGTATTCGAAGCTAAATAACAAACTACC----TT 230145 | || | || | || ||| |||| |||| |||||||| ||||| || || | Sbjct 912 TCCA-CTGCGACTTCGCG-TGTCTGCTGTACTCGAAGCTTGTCAACAAGCTCCCGGAGTC 969 Query 230146 TCGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCG 230205 || | | || | | ||| || | || || | ||| ||||||||| | | Sbjct 970 GCGCATCCACGAGATCATTCG----CGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGG 1025 Query 230206 ACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAAT 230265 || | |||| | || ||||||||||| | |||||| | || || || || | Sbjct 1026 ACTCGCTTCCGGTCGAGCTCATCGGCATGAACTCGTCGCTCATGTGCCAGTACATTGAGT 1085 Query 230266 TCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACC 230325 || || ||||| | || ||||| || || || | || || ||||| Sbjct 1086 TCTGTGCCGATCGCCTCCTCCACGCGCTTGGTGTCGCCAAGATCTACAAGGTGTCGAACC 1145 Query 230326 CCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTG 230385 | |||| | ||||| | || || |||||||| || || ||||||||||| ||||| | Sbjct 1146 CGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCG 1205 Query 230386 TCAGCGATTA-TCAAAGGCC 230404 | |||| || || |||||| Sbjct 1206 TGGGCGAGTACTCCAAGGCC 1225 >seq2345 Length=2372 Score = 122 bits (134), Expect = 2e-22 Identities = 676/1059 (64%), Gaps = 57/1059 (5%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 1409 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAGG 1350 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 1349 TGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 1290 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 1289 TTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGAC 1230 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCA-TT 316400 || || || ||||| || | |||| | || | ||| |||||| ||| | Sbjct 1229 TTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA-------GCACGT 1177 Query 316401 CACGT---TGTC---GAAGACCAGTTTGTCCGTCCCAGGATACTTG-AAACCCACCCCGC 316453 ||||| |||| || | | ||||| ||||| |||| | | || || Sbjct 1176 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAGCAGTTCG- 1118 Query 316454 GAAGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGG 316510 || ||||| ||| || |||| ||||| | | || || || || || | Sbjct 1117 TCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCAG 1061 Query 316511 GGAATTTCCAC--GTAGTCTTC-GTCTCGGCGAGCGTGTAGTA--ACTTGCAGATTCGGG 316565 |||| | || | || | | | || | ||| |||||| |||| | || || Sbjct 1060 GGAACGTGAACTTGAAGGCAGCAGCCT---CAAGCTCGTAGTACGTCTTG--GCCTCCGG 1006 Query 316566 ACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTC 316625 || ||| ||||| || || || || || || ||| |||||||||| |||| || Sbjct 1005 CTTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTC 949 Query 316626 GTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCAC 316685 ||| |||||||| || ||||| | |||||||||||||| ||||| || ||||| | Sbjct 948 GTAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAG 889 Query 316686 ACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGA 316745 | | ||| | ||| | || ||||| ||||| | || || |||| Sbjct 888 CGACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATC 829 Query 316746 AAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGC 316805 | ||||| ||||| || || || || || | | || | || ||||| || || || Sbjct 828 CAAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGC 769 Query 316806 GAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCG--GGGCA--GATTGGC 316861 | |||||||||| ||||| || || || || | | || |||| | || Sbjct 768 CAACTCAAGCTTCATCTTCCAACCACCCGAGAGGG----CACCGACAGGCATGGCCTGCA 713 Query 316862 GCTCAACATCAAAGCCAACTGATTCGAGAGTA-GACAC-GATTTTTTCACGAGACCATGT 316919 ||| | ||||| || ||| ||| | | ||| || | ||||| | || | Sbjct 712 TCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCG-GCAGG- 657 Query 316920 GTTTTCTTTAACTTGG--TCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAGATTCG 316977 ||||| | || |||||| | |||||||| | || | | || || Sbjct 656 ---TTCTTGA---GGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCC 603 Query 316978 GATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCT 317037 | | ||||| ||||| || | | || || || ||||| ||| ||||| || Sbjct 602 TCAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCC 543 Query 317038 TCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCG 317097 || | ||| |||||| || || | ||| || |||||||| || ||| || |||||| Sbjct 542 TCGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCG 483 Query 317098 CAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTA 317157 || ||||| || || | || ||| || || |||| ||||||||| |||||| || Sbjct 482 CACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 423 Query 317158 CCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||||| || || || |||||||| || | || || ||| Sbjct 422 CCACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 384 >seq38185 Length=452 Score = 109 bits (120), Expect = 1e-18 Identities = 194/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | |||||| ||||||||| || ||||||| || |||||||| Sbjct 393 CGTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTG 334 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| || ||| | ||||||| |||||||| ||||| ||||| || || Sbjct 333 TCCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGAC 274 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| || || || ||||||||||||| || || |||| || | || || Sbjct 273 GATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCTGTGTGCTCACTGCAGTAGCC 214 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTT---GAATGCGGAATACAA 274015 | || ||| || ||||| || || |||||| || ||||| | | ||| | | Sbjct 213 AGCGAGCTGCGCGACCTTGACTTCCTTCGTCAGCTTGCGCTTCAGGCACGCG---AAGAG 157 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||||| ||||||||| ||| || || || || || || || Sbjct 156 CACCTTGCGCTGCGAGACCTTCAAGCCGTCGACCACAGACGG 115 >seq38184 Length=452 Score = 105 bits (116), Expect = 1e-17 Identities = 193/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | |||||| ||||||||| || ||||||| || |||||||| Sbjct 393 CGTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTG 334 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| || ||| | ||||||| |||||||| ||||| ||||| || || Sbjct 333 TCCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGAC 274 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| || || || ||||||||||||| || || |||| || | || || Sbjct 273 GATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCTGTGTGCTCACTGCAGTAGCC 214 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAACA 274017 | || ||| || ||||| || || |||||| || ||||| | | || | ||| || Sbjct 213 AGCGAGCTGCGCGACCTTGACTTCCTTCGTCAGCTTGCGCTTCAGACACGCGA-ACAGCA 155 Query 274018 CCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||| ||||| ||| ||| | || || || || || || Sbjct 154 CCTTGCGCTGTGAGACCTTCAGGCCGTCGACCACAGACGG 115 >seq36561 Length=468 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 355 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 414 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 415 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 468 >seq43746 Length=404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 291 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 350 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| |||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 351 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 404 >seq42683 Length=413 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| |||||||| ||| || || | || || | ||||| | ||||| Sbjct 111 TACCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAGGGCTCGACG 169 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 170 TCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045926445609708