Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq106 208 2e-48 seq215 102 2e-16 seq69 95.1 3e-14 >seq106 Length=40908 Score = 208 bits (230), Expect = 2e-48 Identities = 692/1057 (65%), Gaps = 51/1057 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 13213 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAG 13154 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 13153 GTGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 13094 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 13093 CTTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGA 13034 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| | || | || | ||| |||||| || | | Sbjct 13033 CTTACCGGCACCGTTCGGGCCGATAACGGCAATACGCGAGGCCAGCGA-ACACG-----T 12980 Query 319230 CACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 ||||||| ||| ||| | || || || || |||| | || || || Sbjct 12979 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTCG 12921 Query 319284 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 319339 | || ||||| ||| || | ||| ||||| | | ||||| || ||||| | Sbjct 12920 TGAGACGAATGATCGGCTTACCCTTGTTCT---TGATATCAGCAAGGAAACCCGGCTCAG 12864 Query 319340 GGAACTTCCACGTG--GTCTTCGTC-TCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||||| | || || | | || | || ||| ||||||| || | || || Sbjct 12863 GGAACGTGAACTTGAAGGCAGCGGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGCT 12807 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || ||| ||||||||||| || || ||||||||| |||| ||||| |||| |||| Sbjct 12806 TCTGCTTGACGAACTCGGAGAGGTTACCCTTGTACGTCTTGAGCTTACGGTT---CTCGT 12750 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | ||||| || ||||| || | ||||||||| || |||||||| ||||| || | Sbjct 12749 AGTGGATGATGTTCGTGCACACCGTGTCGAGGAAACCAGAGTCGTGCGACACGATGAGCG 12690 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 ||| |||| | ||||| | | ||||| || | |||| | ||||| |||| | Sbjct 12689 ACGTCACGTTCGTAAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCCA 12630 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || | Sbjct 12629 AGTGGTTCGTCGGCTCATCAAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCCA 12570 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 319696 |||| ||||| ||||| || || | |||| | |||| |||| || | Sbjct 12569 ACTCGAGCTTCATCTTCCAACCACC--AGAGAGGGCACCGACAGGCA---TGGC-CTGCA 12516 Query 319697 TATCA------AAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAAT 319748 | ||| ||||| || || ||| | | || || || ||||| | | | Sbjct 12515 TCTCAGCCGTGAAGCCGAC--GCTCGTGAGCATATCACGGACCTCCTCACGCGGC---AG 12461 Query 319749 GTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| ||| | || ||| | ||||||||||||| | | || || Sbjct 12460 GTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCAATGACCGGAAGCTCAGCCTCCTC 12404 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | ||| | ||| || ||| | | || || | ||||| | ||||| || || Sbjct 12403 AGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGGGTCGGGAAACCCTC 12344 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 12343 GAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGCA 12284 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||||||| || || || ||| || || | ||||||||| ||||| | || Sbjct 12283 GAGACCGTAGCGGTGGCCACGCTTGAGGCGGAGACGGGCGTTGTTCAGCAGAATCATACC 12224 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||| || || || || || || || | || |||||| Sbjct 12223 ACCGTACGCGAGCGAGAACTCGCAGTTGCAGAGATCC 12187 >seq215 Length=29001 Score = 102 bits (112), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 |||||||||||| | | ||||||| ||| || || ||||| || | || |||||||| Sbjct 10092 CGTGAAGATATAGCGCGGACTCGCGGCGTCCTTGCCGCCCTGAAGGCGCGTGCCAAACTG 10033 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 ||| ||| ||| | | | ||| ||| ||||| || ||||| |||| |||||| Sbjct 10032 TCCCGACGGATACAGCAACGGCAAGTTGTTGGCACCGACATAGTCCTGTGCCATGTTGAC 9973 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA-TAAC 281919 || ||| || ||||| |||| |||||||| || || |||| || || ||| |||| Sbjct 9972 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAAC 9914 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTT 281962 || || ||| || ||||| || || |||| ||||| || Sbjct 9913 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTT 9871 >seq69 Length=49210 Score = 95.1 bits (104), Expect = 3e-14 Identities = 291/442 (66%), Gaps = 6/442 (1%) Strand=Plus/Minus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 |||| ||||||||| ||||||| | | |||||| || || | || || || | Sbjct 8648 CGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGT 8589 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | ||||| ||||| ||| || | |||||||||||| | | || |||| Sbjct 8588 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACG 8529 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAG 230349 || | ||| || |||||||||||||| | ||| ||| | || |||| || ||| Sbjct 8528 AGCTGATCTCGCGTGACGAGGGTCTCCACTGCGACTTC-GCGTGCCTGCTGTACTCGAAG 8470 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 ||| |||||||| || | | || || | | |||||| || || |||| | Sbjct 8469 CTCGCCAACAAGCT-CCCTGAGTCTCGCATCCACGAGATCATTCGCGATGCCGTTGCGAT 8411 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG-CCTTATTGGCATGAACGCTGAAC 230467 ||| |||||||| | ||| | ||| || | || || || |||||| | | Sbjct 8410 CGAGAAGGAGTTTGTCCAGGACTC-GCTCCCGGTGGAGCTCATCGGTATGAACTCGTCCC 8352 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | |||||||| || ||| ||||| ||| | | || |||||| | | Sbjct 8351 TCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTTGCCA 8292 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | | ||||| |||||| || | | ||||| | || ||||| || || |||| Sbjct 8291 AGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGA 8232 Query 230588 CCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||| ||||| || Sbjct 8231 CCAACTTCTTCGAGAAGCGCGT 8210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057646992987800