Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq208 250 5e-61 seq81 118 2e-21 seq69 91.5 3e-13 >seq208 Length=29794 Score = 250 bits (276), Expect = 5e-61 Identities = 623/933 (67%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 13482 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTC 13423 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| || || ||||| ||| | |||| || || ||||| || ||| Sbjct 13422 GGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCCGTCGGCATCCAC 13363 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| | ||||| || || ||||||||||||| ||| || ||| | || Sbjct 13362 AAGCACGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 13303 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || |||||||| ||||||||||| || | |||||| |||||||| Sbjct 13302 CACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTC 13243 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || |||||| | |||||||| |||| ||||| ||||||||||| || ||| || Sbjct 13242 CTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCT 13183 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | || ||||| |||||| | || ||||||||| |||| Sbjct 13182 TGCATCTCCAAGTGGGCCGGCGGCATCGGTGTTAGTGTGCACAACATCCGCGCGACCAAC 13123 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGATGCTT 249227 ||||||||| || || || || || | | || |||| ||| | || || || Sbjct 13122 TCGTACATCCGCGGCACGAA-CGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTT 13064 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAG---GCCGGGCGCCGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | | ||| | ||| || ||||| |||||||| || Sbjct 13063 CAACGACACGGCGCGTTATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCGCGAT 13004 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 ||| |||| |||||||||||| || || |||||||| ||| | || |||||| |||| Sbjct 13003 GTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGG 12944 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||||||||| | |||||||| |||||||||| ||||| || |||| ||||||| Sbjct 12943 CAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTGTTCAT 12884 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | ||||| ||||| ||||||| |||| || | | ||| ||| || |||| || Sbjct 12883 GAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCT 12824 Query 249465 C--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAAC 249519 | ||| | || | ||| |||| | || || || | | ||||| | | Sbjct 12823 CTACACGACGT--GGGGTGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCGCGAG 12769 Query 249520 GGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCC 249573 ||| || ||||||| ||| || | | || || |||| | | ||||| Sbjct 12768 GGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGAGTCG 12712 Query 249574 CAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||||| ||||| || |||||| | | ||| ||| |||||||| |||| ||| Sbjct 12711 CAGATCGAGACGGGCACGCCGTACATGCTCTACAAGGACTCGTGCAACCGCAAGTCGAAC 12652 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | | || || || ||||||||| || ||||| ||| |||||| || | ||| | Sbjct 12651 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTTGAGTACAC 12593 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| || ||| | || || |||||||| || Sbjct 12592 GTCGCCCGACGAGGTCGCGGTGTGCAACCTCGC 12560 >seq81 Length=45817 Score = 118 bits (130), Expect = 2e-21 Identities = 195/276 (71%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 |||||||||||||| || ||||| ||||| | | ||||| ||||| || |||||| Sbjct 44353 CTCGAGCTGAACGCCTCGGACGATCGCGGCATCAAGGTCGTGCGCGAGAAAGTCAAGAGC 44294 Query 254166 TTCTCCAAGATGTCGATTTCGTC-GTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGAT 254224 || | || | || || | | || ||||| ||||| |||||| || | | Sbjct 44293 TTTGCGCAG--GGCGCAATCAGCAGCTCGT--CCGGCATGCCGCCGTTCAAGATCATCGT 44238 Query 254225 CCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA 254284 ||||||||||| ||| | ||||| | |||||||||||| || || || || | |||||| Sbjct 44237 GCTGGACGAGGCCGACTCGATGACCGGCGACGCGCAGTCGGCACTGCGTCGCATGATGGA 44178 Query 254285 GACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATC 254342 | ||||| || ||||| || ||||| | || |||||||| | || | ||||| Sbjct 44177 AAACTACTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTACGTCAGCCGCA--TCATC 44120 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 | ||| | || || || || ||||||||||| ||| Sbjct 44119 GAGCCGATCGCGTCACGTTGTGCCAAGTTTCGGTTC 44084 >seq69 Length=49210 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 157243 AACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 ||| |||| ||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 8185 AACGCCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 8244 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| ||||| ||||| Sbjct 8245 CGAGATCATGTCCATCCAGTCGAACGGGTT 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073586725326080