Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq208 509 1e-139 seq69 217 1e-51 >seq208 Length=29794 Score = 509 bits (564), Expect = 1e-139 Identities = 1253/1870 (67%), Gaps = 46/1870 (2%) Strand=Plus/Plus Query 22138 CGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATG 22197 |||| | |||| || || ||||| |||||||| |||||| |||||||||| || || || Sbjct 11668 CGGTCGGCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTG 11727 Query 22198 TATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTG 22257 || ||||||| || | ||||| | |||| ||| |||| |||||| ||||| Sbjct 11728 CATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTG 11787 Query 22258 ATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCA 22317 ||| | || || || ||||||||||||| | || | | | || ||||| Sbjct 11788 GCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCA 11847 Query 22318 TACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACC 22376 || ||||||||| | | | | | ||| ||| | || | | ||| || || | Sbjct 11848 CACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATC-ACGCGCACGTTCTGCACTGAGC 11906 Query 22377 CGTTATTGTGTATGATCAAATTTTTAA--TCGTATCGTTCCACAAACCGATGGCGGTCAA 22434 ||| | ||| | |||| || | ||| ||| ||| | ||||| || | | Sbjct 11907 CGTGGTCGTGCAGGATCTGGTTGCGCACCTCGGG-CGT-CCAGATACCGAGCTCGATGAG 11964 Query 22435 ATCTTTGACCAGATGACGGTTCACCA-CTTGAAACTCGCCGGACAAG-ACGCGGCGTTGG 22492 || || | ||| | |||||| | | |||| |||||| | |||| |||||||| | | Sbjct 11965 CTCCTTCATCAGGTACTTGTTCACGATCGTGAA-CTCGCCTG-CAAGCACGCGGCGGTTG 12022 Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || ||||||| |||||||| |||| || || ||||| ||||| ||||| |||||||| Sbjct 12023 TACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGAC 12082 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 || |||||||||||||| | ||| |||||||| | || |||| || | | | | Sbjct 12083 GCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCC 12142 Query 22613 TTGAGCATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTAT 22669 |||||| | ||||||||| || |||| |||||| || | ||||||| ||||| Sbjct 12143 TTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGAC---GCCCCACATGTCGTAC 12199 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG 22729 || || | ||| ||| | || ||| ||||| | ||||||| || | | Sbjct 12200 TGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTC 12259 Query 22730 GCAAGTTCGCAGC-TCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 || || || || | ||||||| ||||||| | || | ||||||||||| |||||||| Sbjct 12260 GCGAGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTT 12318 Query 22789 CAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCA 22847 | ||| ||| || |||| || || || || | ||| | | |||||||||||| | Sbjct 12319 GAGCTCGCGGGCCTCGTCGCTCTCAAAC-GCGTAGCCCATGAGGATGAACGCGTCCGCGA 12377 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATT-CGACACTTTTGCCTCGGGC 22906 |||||| ||||| || |||||||| |||| ||| || | | | | |||||||| Sbjct 12378 GACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGC-TCAGCCTCGGGG 12436 Query 22907 AAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATN 22966 | || || | || ||||| |||| | ||| | || || | || || || Sbjct 12437 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATG 12496 Query 22967 NNNNNNNNNNNNTCAAAGTCGTAAACGCC----CGATTGTACAACAAACTTGTTGACGGC 23022 | |||||| || | | || | || | ||||||||| | || Sbjct 12497 TCGTACAGCTTCTTGAAGTCG--AAGGTCTTGTCG-TCGTTC-ACAAACTTGGACAGCGC 12552 Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 ||| || || || ||||| || || |||||||| ||||||||||| | | ||| Sbjct 12553 GATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCAAGCACCTCGCA 12612 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || || ||||| | |||||||| | || |||||| || || |||||||| Sbjct 12613 GCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGA 12672 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| Sbjct 12673 GTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCA 12732 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACA 23261 | ||| ||| | | |||| || | | ||| || |||||||| ||||||| Sbjct 12733 GAGCTGCTGCGCGCGGA-TCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACA 12791 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTC--GGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||| || || ||| |||| | ||| | || || |||| | |||| || | Sbjct 12792 GCGCCTCGAACTCGTCACCCCA--CGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAA 12849 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || |||||| || |||||||| |||| || ||||| || ||||| | || Sbjct 12850 CAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGC 12909 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| || || || ||||| | ||| |||||| |||||| || | || | || Sbjct 12910 GTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAA 12969 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || | ||| || ||||||||||| ||||| | || |||| |||| | |||| Sbjct 12970 CTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACC 13029 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| |||||||| || ||||| ||||||| |||| |||| | ||||| |||||||| || Sbjct 13030 GCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCC 13089 Query 23560 GTTGGACGCGCCGCCTACG-CCCGC-CACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||| |||| |||| | || |||| | ||| | || || | |||||| || Sbjct 13090 GTTCGACGAGCCG--TTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACA 13147 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | ||| ||||| ||| || | || || || ||||| || || || ||||| ||| Sbjct 13148 CTAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAG 13207 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||||||||| ||| || || | |||| || ||| ||||| |||| |||| Sbjct 13208 ATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGC 13267 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 ||||| |||| |||||| ||||| | |||||||| ||| | | | |||||| Sbjct 13268 GGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTAC 13327 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 | |||||| |||| ||||| || ||||| | ||| || |||| ||||||||||| Sbjct 13328 TCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGA 13387 Query 23858 ATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914 ||||| | || || | || ||||| || | ||| | | || || || Sbjct 13388 ATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCG---ACGCGCAGGAGGTACGACTTC 13444 Query 23915 TGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAA 23974 | | ||| || || ||||| ||||| || | |||||| || ||||| | || ||||| Sbjct 13445 TCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTGGATGATCGCCGAG 13504 Query 23975 TTCAAACGGT 23984 || | |||| Sbjct 13505 TTGAGGCGGT 13514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 ||| | |||||| || |||||||| || || | || |||| | |||| || || || Sbjct 11509 GGCCGCCTTGTCGACCGTAAACTGGATCGCATCGGCCTTCGGTCGGCTGCGGAGGTAGTA 11568 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCA 22208 ||| |||||||| |||||| |||||||||||||||| || || ||||||| Sbjct 11569 CATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCA 11618 >seq69 Length=49210 Score = 217 bits (240), Expect = 1e-51 Identities = 555/828 (67%), Gaps = 14/828 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT-GTC 57631 ||| | |||||||| ||||| || || || ||||| | ||||| | ||||| ||| Sbjct 9036 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTC 8977 Query 57632 TAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGT 57691 | | | || | || ||| | ||||| || ||| | | || || || ||||| Sbjct 8976 CACG-ACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCACGT 8918 Query 57692 GTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTC 57751 | | ||||| ||||| || ||||| || || |||||||| | | ||| || ||| Sbjct 8917 GCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGAT-GAACTTC 8860 Query 57752 ACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 | || | ||||| || | |||||| | ||||| || || || || | || ||||| Sbjct 8859 AGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATTGCGATTGAG 8800 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||| | || || || |||| ||||| |||||||| |||||| | |||||| | |||| Sbjct 8799 AACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAG 8740 Query 57870 AAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTG 57928 || || || ||| ||||| || || ||| ||| | |||||||| | || Sbjct 8739 AAGAACCACCTTCTCCGCGCCATCGAGACGATCCCCTGCGTGCAG-AAGAAGGCGCACTG 8681 Query 57929 GTCAATCAAATGGATAAAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCG 57987 | | | || ||| | ||||| || || ||||||||||| | | ||||||||| Sbjct 8680 GGCGCTTAAGTGGTGCGACTCGCGCCGCG-CCGCGTTCGCCGAGCGTATCGTCGCGTTCG 8622 Query 57988 CCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAA 58046 | || || || || || ||||| |||||| || ||| | || || ||| | ||||| Sbjct 8621 CTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCAAGAAG 8563 Query 58047 CGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTC 58106 |||||||| ||||| ||||| | || |||||| |||| ||||| |||||||||||| Sbjct 8562 CGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTGATCTCGCGTGACGAGGGTCTC 8503 Query 58107 CATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGC 58166 || || || |||||||| ||||||| | | | ||| || | | | |||| Sbjct 8502 CACTGCGACTTCGCGTGCCTGCTGTACTCGAAGCTCGCCAACAAGCTCCCTGAGTCTCGC 8443 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTA 58226 ||| || || || ||| || || |||||||| || ||||||||| || | || Sbjct 8442 ATCCACGAGATCATTCGCGATGCCGTTGCGATCGAGAAGGAGTTTGTCCAGGACTCGCTC 8383 Query 58227 CCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCC 58286 ||||||| | ||||||||||| | |||| ||||||||||||| ||| Sbjct 8382 CCGGTGGAGCTCATCGGTATGAACTCGTCCCTCATGTGCCAGTACATTGAGTTCTGCGCC 8323 Query 58287 GACAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT-TACAACACGAAAAATCCGTTTGA 58345 || | || | | || || || | | || ||||| | || ||||| || Sbjct 8322 GATCGCCTCCTCCACGCGCTTGGTGTTG-CCAAGATCTACAAGGTGTCGAACCCGTTCGA 8264 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | ||| | ||||||||||| |||||||||| ||||| ||||| || Sbjct 8263 CTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 8216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445693628635200