Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 187 4e-43 seq15 183 5e-42 seq349 127 3e-25 >seq6 Length=90804 Score = 187 bits (206), Expect = 4e-43 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||||||||| || || Sbjct 83120 CGCTAAGCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 83061 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| ||||||| || |||| || |||| Sbjct 83060 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTGATCTACGAGGAGAC 83001 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| || |||| || | || || || || Sbjct 83000 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAATGTCATCCGGGACTCGGTCACGTACACGGA 82941 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || |||||||| || || ||||||| ||||||| || | || ||||| || Sbjct 82940 GCATGCGCGCCGTAAGACCGTTACTGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 82881 Query 16672 CCG 16674 ||| Sbjct 82880 CCG 82878 >seq15 Length=80125 Score = 183 bits (202), Expect = 5e-42 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 46260 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 46319 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 46320 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 46379 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| | | ||| || || Sbjct 46380 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 46439 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 46440 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 46499 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 46500 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 46533 >seq349 Length=20695 Score = 127 bits (140), Expect = 3e-25 Identities = 189/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 12065 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCCGCGAT 12006 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || || || |||||||| || || | |||| || |||| Sbjct 12005 CCGCCGTCTCGCTCGCCGAGGAGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 11946 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || || || || Sbjct 11945 GCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCACGTACACAGA 11886 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 11885 GCACGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 11826 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || |||||| | ||| Sbjct 11825 ACGCACGCTCTACGGGTTTGGAGGCTAA 11798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063259150580