Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq208 446 4e-120 seq513 138 3e-27 >seq208 Length=29794 Score = 446 bits (494), Expect = 4e-120 Identities = 1192/1801 (66%), Gaps = 38/1801 (2%) Strand=Plus/Minus Query 363379 GAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGG 363437 ||||| || || ||| || | |||||| | ||||| || ||||| || || ||| Sbjct 13476 GAGTACGACTACTTT-GGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGG 13418 Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 | | | ||| ||||||||||| ||| | |||| || || | || ||||| | Sbjct 13417 CAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCCGTCGGCATCCACAAGCA 13358 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCAC 363555 || | || |||||| | || || || || | | || || | | ||||||||| Sbjct 13357 CGACATCGACGCCGCGCTCGAGACGTACGAG--TACATGTCGCAAAGCTTCTTCACGCAC 13300 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || ||||| || ||| ||| || || || | || ||| |||| || ||||| || Sbjct 13299 GCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTG 13240 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || ||||||||||| || |||||||| |||| |||||| || ||| | || ||| Sbjct 13239 CTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCTTGC 13180 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 || |||||| || ||||| || ||||| | ||||| | || || ||| Sbjct 13179 ATCTCCAAGTGGGCCGGCGGCATCGGTGTTAGTGTGCACAACATCCGCGCGACCAACTCG 13120 Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||||| |||||||| || | ||||| || || || |||||||| || ||||| || Sbjct 13119 TACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAAC 13060 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 | || ||| | || || || |||||||| || |||||||| || |||| || ||||| Sbjct 13059 GACACGGCGCGTTATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCGCGATGTAC 13000 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915 || ||||| || ||||| || || ||||| || || ||| ||| ||| || || Sbjct 12999 CTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAAC 12940 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 ||| || || |||||||| ||||| || | ||| | | || | || |||||| Sbjct 12939 GAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTGTTCATGAAG 12880 Query 363976 CGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 ||||| ||||| || || ||| || || ||||| |||| || ||||| Sbjct 12879 CGCGTTGAGGCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTC 12823 Query 364033 TCC--GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | | || || |||||||||| | | || || ||| | |||| || ||||| Sbjct 12822 TACACGACGT--GGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCC 12765 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 || || ||||| || | ||| ||| |||| ||||| || ||| | || |||||||| | Sbjct 12764 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 12705 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 |||| || || || || ||| | ||||| || ||||||||||||||||| ||||||||| Sbjct 12704 AGACGGGCACGCCGTACATGCTCTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGA 12645 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 |||| || || || | ||||||||| || |||| | |||| ||||| | |||| Sbjct 12644 ACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTTGAGTACACGTCGCCCG 12585 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG--- 364327 ||||| || || || ||||| ||||| |||||||| | |||||| || || | Sbjct 12584 ACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGACGACA 12525 Query 364328 GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACA 364387 || || ||| | || | || || ||| | ||| | | || |||| ||| ||| Sbjct 12524 AGACCTTCGACTTCAAGAAGCTGTACGACATCACCAAGGTCGTCACGCGCAACCTCAACA 12465 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATC 364447 |||| ||||||| || || || || || || || || ||||| || |||| || | Sbjct 12464 AGGTCATCGACATCAACTACTACCCGATCCCCGAGGCTGAGCGAAGCAACCTGCGCCACC 12405 Query 364448 GCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGG 364504 ||||||| || | || || ||||| ||||| |||| | | || |||| | | Sbjct 12404 GCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGT---TCATCCTCATGGGCTACG 12348 Query 364505 CATTTGA-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 | ||||| || | || || || | || || ||| | ||||| || || |||| || Sbjct 12347 CGTTTGAGAGCGAC-GAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTC 12289 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 | ||| ||| || ||| || | || || | || |||| | | || ||| Sbjct 12288 GGCGCGATGGAGGCCTCGATGGAGCTCGCGAAGGAGCACGGCCCGTACGCCAGCTACGAG 12229 Query 364624 GGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATC 364679 || || || | | || |||| | ||||||| || | ||| ||||||| | || Sbjct 12228 GGCTCACC-CGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGTC 12170 Query 364680 TGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 | || ||| |||||| |||| ||| ||| | || | ||| |||||||| Sbjct 12169 CGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGTGTGCGCAACTC 12110 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 || | ||||| ||||| ||||| || || || |||||||| || |||||||||| Sbjct 12109 GCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTGGGCAACAACGAGTC 12050 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||| ||||| || | ||| | || ||||| || ||| | || || || || | Sbjct 12049 GATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTTCACGAT 11990 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| | ||||| || ||| | ||| | ||| | || Sbjct 11989 CGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGTATCTGGACGCCCGAGGTGCG 11930 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 ||| | ||| | || | || || ||||||||| | | | | || || | | Sbjct 11929 CAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACGTGCGCGTGATCCCGGATGCCGT 11870 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCATTGATATGGC 365036 |||| | ||||| || || ||||| || || || ||| | | | |||||||| Sbjct 11869 GAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCCGTGCTCGATATGGC 11813 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCC 365096 ||||| ||||| || | ||||| |||||||||||| | ||||| ||| | |||| Sbjct 11812 CGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACATCGCGGAGCC 11753 Query 365097 AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | |||||| || |||||||| ||||| | |||||| ||||||||||| || Sbjct 11752 GACGATCAGCAAGCTGACGTCCATGCACTTCTATGCGTGGAAGAAGGGTCTTAAGACGGG 11693 Query 365157 T 365157 | Sbjct 11692 T 11692 >seq513 Length=15584 Score = 138 bits (152), Expect = 3e-27 Identities = 345/518 (67%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 ||||| || |||||||| || | || ||||| || || || |||||| | || Sbjct 3847 GAAGAGCTGCTGTGGTTCATCAGTGGCGACACAAACGCCAA-GACGTTGCAGGACAAGGG 3905 Query 111420 G-TAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA 111478 | | || |||||||| |||||||| || | ||||| | ||||||| || Sbjct 3906 CATCCATATCTGGGATGGCAATGGATCCAAGGAATACCTAGAGAGCATCGGTCTTG--GA 3963 Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || ||| || |||||||||||||| || || || || ||||||||||||||||| Sbjct 3964 CATCGTGAAGCTGGCGATCTCGGACCAGTGTATGGCTTCCAGTGGCGCCACTTTGGTGCC 4023 Query 111537 GACTACAAAACCATGCACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAAT 111593 | |||| |||||||| | | || | || |||||| || || | | | Sbjct 4024 AAGTACACGACCATGCATG---CGGATTACTCTGGCCAGGGAGTCGACCAGCTGGCGGAG 4080 Query 111594 GTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 |||||| | | | |||| ||||||| ||||||||| || ||| ||||||||| Sbjct 4081 GTCATTCACAAGCTCAAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAAC 4140 Query 111654 CCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTA 111713 || | || | | ||||| || || || ||||| | | |||||||| || || Sbjct 4141 CCTGCGGACCTGAAGGAGATGGCGCTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTC 4200 Query 111714 CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTT 111773 | |||| ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 4201 GCCAACGGCGAGCTCTCGTGCCAGATGTACCAACGCTCAGCTGACATGGGACTCGGCGTG 4260 Query 111774 CCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTC 111833 || ||||| || || || ||||| || | ||| | | ||||| || | ||| || Sbjct 4261 CCTTTTAACATCGCGAGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTG 4320 Query 111834 AAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCA 111871 | || || ||||| ||| ||||| |||||||| Sbjct 4321 CGTGCTGGAGATTTCATCCACACGATCGGCGATGCGCA 4358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303135508212920