Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq208 293 2e-74 seq562 96.9 3e-15 seq69 95.1 1e-14 >seq208 Length=29794 Score = 293 bits (324), Expect = 2e-74 Identities = 1144/1767 (65%), Gaps = 61/1767 (3%) Strand=Plus/Plus Query 144750 TGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACG 144809 |||||| |||||||| ||||| || || ||| ||| | ||| ||| || |||| Sbjct 11676 TGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGACG 11735 Query 144810 TCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGA 144869 ||| | | ||| |||||||| | || || ||||| ||||| || ||| Sbjct 11736 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 11795 Query 144870 AAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGT 144927 | ||| ||||||||||||||| || | || | | ||| || || ||||| | || Sbjct 11796 AGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGC--TTGATCTCCCACACCGT 11853 Query 144928 CTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT- 144986 ||||||| || | | ||||| || || | ||| | || || | || Sbjct 11854 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 11913 Query 144987 GCGCAA-ATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 | ||| || ||| || |||| |||| ||| | | | || ||| | || | Sbjct 11914 GTGCAGGATCTGG--TTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTTC 11971 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 || | ||||| || |||| | |||||||| || | ||| || || |||| ||| Sbjct 11972 ATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 12031 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 | |||||| || || | |||||||| ||||||||||| || ||||||| || || ||| Sbjct 12032 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGC 12091 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| | || | || ||||||| |||| || | || | |||| |||| Sbjct 12092 ATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCCTTGAGCGCG 12151 Query 145226 CCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 |||| ||||| || || |||||| | ||| |||||||||||||||| || |||||| Sbjct 12152 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 12211 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAA 145342 | ||| |||| ||| | || ||| ||| || |||||||| || Sbjct 12212 TTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CAT 12270 Query 145343 C-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC 145401 | ||||||| |||||||| || | |||||| || | | |||||||| || Sbjct 12271 CGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGC 12330 Query 145402 TTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCC 145461 || |||||||| ||| || || || | || || || ||||| ||||| | || Sbjct 12331 CTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCC 12390 Query 145462 CACGCCGATGGGCCGATGTTTCATGTT-----GCTCATCCTCGCCGACTCGATAGGATAT 145516 | |||||| || || || || ||| ||||| ||||| || | ||| | | Sbjct 12391 GATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAGCCTCGGGGATCGGGTAGTA-GT 12449 Query 145517 CGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAAC 145576 ||| |||||| | || || | ||| ||| || ||||| || |||| || | Sbjct 12450 TGAT----GTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGC 12505 Query 145577 TTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGAC--GGCGATCGACG 145634 || | ||||| || | || ||| || |||| | || | ||| ||||| |||| Sbjct 12506 TTCTTGAAGTCGAA---GGTCTTGTCGTCGTTCACA-AACT-TGGACAGCGCGATGGACG 12560 Query 145635 CCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAA 145693 | | || || || || ||| || |||| || |||| | | | |||| ||| | Sbjct 12561 CGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCAAGCACCTCGCAGCAGAGG 12619 Query 145694 TTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTG 145753 ||||| | ||| || || || || ||||| || || | |||||||| ||||||| Sbjct 12620 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 12679 Query 145754 TAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAG 145810 |||||||||||||| ||| ||||| | ||||| ||| | ||| || | | || Sbjct 12680 TAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGC--- 12736 Query 145811 TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCC 145870 | |||||| || | | || | ||||||||| ||||| | ||| ||| || Sbjct 12737 TGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCC 12796 Query 145871 TCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGAC 145930 || ||| || ||| | | | || || || || ||| || || | ||| | Sbjct 12797 TCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTC 12856 Query 145931 CATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATC 145990 || |||||||||| | ||||||| ||| |||| ||| || | ||||| |||||| | Sbjct 12857 CACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAG 12916 Query 145991 AAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC-GCTTCAAATTAAGCACACT- 146046 | | ||||||| |||| ||| | || || ||| ||| | | || | ||| Sbjct 12917 AGATCACGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTCTTGAGGTCGAGGA-ACTC 12972 Query 146047 ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCC 146103 ||||||| ||||||||||| || | || | |||| | || || || || ||| Sbjct 12973 GAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCC 13032 Query 146104 ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCT 146163 |||||| ||||| | ||| || ||| ||| || ||||||| ||||||| ||| |||| | Sbjct 13033 ACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTT 13092 Query 146164 GGCTACGCCGTTCGT--AGAGTTTATTCTGGT--GCCGCGGGAGCGCACGCAATGAACAT 146219 | ||||||||| | | | | | || | ||| ||| | | || ||| Sbjct 13093 CGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGC----GCGGATGTTGTGCACAC 13148 Query 146220 TCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGA 146279 | || |||| |||||| | ||||||| || ||||| | |||||| || |||| Sbjct 13149 TAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGA 13208 Query 146280 TGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCAT 146337 |||| || || ||| |||| ||| ||||||| |||||||| ||| ||||| Sbjct 13209 TGCCCTCGATCGAGTCGTCCTTC--ATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCG 13266 Query 146338 CGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCAT 146397 |||||| || || ||||| |||||| |||||||||| || | || | ||| Sbjct 13267 CGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA 13326 Query 146398 CCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCAT 146457 | ||||| |||| ||| | | ||||||| || ||||| | |||||||||| Sbjct 13327 CTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAG 13386 Query 146458 GAGCATGTGTTGGGGCCGCTCCGCCAC 146484 | ||| || || || ||||| || || Sbjct 13387 AATCATCTGCTGCGGGCGCTCAGCGAC 13413 >seq562 Length=14249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 13911 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 13970 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 13971 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 14030 Query 131128 ATTCCT 131133 |||||| Sbjct 14031 ATTCCT 14036 >seq69 Length=49210 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACA---GCAGCACC 46140 || || ||||||| ||||| | |||||||| | |||||| | || || || || Sbjct 8709 ATCCCCTGCGTGCAGAAGAAGGCGCACTGGGCGCTTAAGTGGTGCGACTCGCGCCGCGCC 8650 Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 ||| |||||||||||||| || || || || ||| |||||| |||| || || ||| Sbjct 8649 GCG---TTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTTGAGGGCATCTTCTTCTCGGGC 8593 Query 46201 -AGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| || | | ||||| | |||| | ||| ||||||| ||||| | || Sbjct 8592 TCGTTCTG-CTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTC 8534 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||||||||| ||||| |||||||| || || ||||| ||||| || Sbjct 8533 GAACGAGCTGATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCT 8483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471935743910400