Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq871 104 3e-17 seq215 96.9 4e-15 seq51 89.7 6e-13 >seq871 Length=9524 Score = 104 bits (114), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 3405 ATCTTCATCGGTCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 3346 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 3345 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 3286 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 3285 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGCGACTG---TCTGATCTCGCACGGCTCG 3229 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| | | |||||||| Sbjct 3228 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTATCGCGTGCACGTGTGC 3169 Query 15635 AAAGACTGCGGCATGAT 15651 | ||||||||| || Sbjct 3168 GACATCTGCGGCATCAT 3152 >seq215 Length=29001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | || ||||| ||| || | |||||||| |||| | |||||||||||||| Sbjct 10091 GTGAAGATATAGCGCGGACTCGCGGCGTCCTTGCCGCCCTGAAGGCGCGTGCCAAACTGT 10032 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || ||| | || |||| ||| |||||||| || ||| ||||||| || | |||||| Sbjct 10031 CCCGACGGATACAGCAACGGCAAGTTGTTGGCACCGACATAGTCCTGTGCCATGTTGACA 9972 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCAC-GTAGCC 126359 || ||| | ||| | ||||||||| | ||| | || ||||| || || ||| || Sbjct 9971 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACC 9913 Query 126360 GCTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 9912 AGCGAGCTGCGCGACCTTGA 9893 >seq51 Length=53042 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 126187 ATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCC 126246 ||||| || || | ||| | ||| || || ||| | | || || ||||||||||||| Sbjct 40563 ATGTAACGAGGCGATGCTGCATCTTTACCACCCGCTAGTCGAGTACCAAACTGACCGTTT 40622 Query 126247 GGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTC 126306 || ||||| || | ||||||| ||||||||| || || || | |||| ||| || Sbjct 40623 GGAGACAACAGATGGATATTGTTGCTTCCCACAAAATCTTGGGCCATGTTGATAATCGTG 40682 Query 126307 TCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGC 126366 || || |||| || ||||| | ||| | | ||||||| ||||| || | ||| Sbjct 40683 CCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGATACGTATCCACCAAGC 40742 Query 126367 TGCGCAACCTTGAT 126380 || |||||||| || Sbjct 40743 TGAGCAACCTTAAT 40756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611292190256000