Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq106 194 3e-44 seq69 149 1e-30 seq51 131 3e-25 seq650 84.2 4e-11 >seq106 Length=40908 Score = 194 bits (214), Expect = 3e-44 Identities = 452/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 12525 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 12584 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || ||||||||||| || |||||| |||| ||||| Sbjct 12585 TCATGAAGGCTGATATCCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 12644 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 12645 TCAAGTGGCTCGAGGACTACCTCACGAGCCTTACGAACGTGACGTCGCTCATCGTGTCGC 12704 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | |||||| | |||||| ||||| ||| || | | Sbjct 12705 ACGACTCTGGTTTCCTCGACACGGTGTGCACGAACATCATCCACTACGAG---AACCGTA 12761 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 12762 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 12819 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| ||||||||||| || || || Sbjct 12820 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 12879 Query 280049 GGAGGGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | ||| | | ||| || || | ||||| ||| | ||| | | Sbjct 12880 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 12938 Query 280108 ATCCCAATGGCCCCAACA--TCTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 12939 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 12995 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 12996 CGCGTATTGCCGTTATCGGCCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 13055 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 13056 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 13115 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 13116 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 13175 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 13176 ACATCCAGTGGCG 13188 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 12187 GGATCTCTGCAACTGCGAGTTCTCGCTCGCGTACGGTGGTATGATTCTGCTGAACAACGC 12246 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| ||| | ||||||||||| |||| || |||||| ||| || || || ||||| Sbjct 12247 CCGTCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGCCCGAACGGTTGCGGTAA 12306 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| | ||| ||||| || || || Sbjct 12307 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCG-AGGGTTTCCCGACCCAGGATG 12365 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 12366 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 12397 >seq69 Length=49210 Score = 149 bits (164), Expect = 1e-30 Identities = 534/822 (65%), Gaps = 20/822 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 8219 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAACGGGTTCGAC 8278 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||||| || || || ||| || || ||||| | Sbjct 8279 ACCTTGTAGATCTTGGCAACACCAAGCGCGTGGAGGAGGCGATCGGCGCAGAACTCAATG 8338 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||| || || | | || ||| | || || Sbjct 8339 TACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCACCGGGAGC-GAGTCCTGGAC 8397 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||||| ||| | ||||| || || | || | | | | | | || || Sbjct 8398 AAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGTGGATGCGAGACTCAGGGAG 8457 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||||| | ||||| |||||||| || | ||| || || | ||| ||||||||||| Sbjct 8458 CTTGTTGGCGAGCTTCGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGACCCTCGTC 8514 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||| | |||||| || | | ||||||||||| | || || ||| ||||||| Sbjct 8515 ACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCA 8574 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||| || || || ||||| | | ||||| ||| | | || || | Sbjct 8575 GAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCAACAGCAGCGAACGCGACGAT 8634 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCA-TGCTGCCTTCT 252034 ||||| || |||| | |||| | |||| | ||||| ||| ||||||| Sbjct 8635 ACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTAAGCGCCCAGTGC-GCCTTCT 8693 Query 252035 T-TCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 | | || ||| |||||| || ||||| || | || |||| ||||| | ||| Sbjct 8694 TCTGCA--CGCAGGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTC 8751 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || || | || || ||||||| |||||| |||||| || | || Sbjct 8752 CTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAAT 8811 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| | ||||||| |||||| ||| | || || || ||||| | || Sbjct 8812 CTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCGC 8871 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || |||||||| ||| | || ||||| | || | | ||||||||| Sbjct 8872 GAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATGAA 8931 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 || ||||| | ||| |||| |||| |||||| | ||| || || | Sbjct 8932 GTAGCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTGGACGAGGTCGAT 8988 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 ||||| |||||||||| | | | | |||||||||||||| Sbjct 8989 CTCTTCAGCCGTCCAGAAGCTCGCCTCGGCCTTCTTGTACAT 9030 >seq51 Length=53042 Score = 131 bits (144), Expect = 3e-25 Identities = 245/359 (68%), Gaps = 1/359 (0%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||||||||| |||||| || ||| || |||||||| ||||| ||||| |||||| Sbjct 40759 GAAATTAAGGTTGCTCAGCTTGGTGGATACGTATCCGAGCATTCTGCGTACCACCACGGT 40700 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || |||||||| | || | ||| | |||||| || || | |||||| || ||||| Sbjct 40699 GAACAGAGTCTCAACGGCACGATTATCAACATGGCCCAAGATTTTGTGGGAAGCAACAAT 40640 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | || || || ||||||||||||||| |||| ||| |||||| || ||| Sbjct 40639 ATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGTAAAGATGCA 40580 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || | | || |||||||| || | || | || || | | ||| | | Sbjct 40579 GCATCGCCTCGTTACATCTTTACGAACCTCGAGCAACTCACACGACGCATCTTCGACCCT 40520 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| | | | | | ||||| || || ||||| ||||||||||| || ||| Sbjct 40519 CTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGATTGAGCCTGAATGG 40460 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 ||||| || ||||| | ||||| ||||||| | | |||||||| || ||||| Sbjct 40459 TATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTATCGGCAC-GGGTT 40402 >seq650 Length=12661 Score = 84.2 bits (92), Expect = 4e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG-GCCACTGA 280243 || || ||||| |||||||| || ||||| | || | || || ||| ||| || Sbjct 1811 AACGGCGCGGGCAAGTCTACGCTCATCAAGATGCT--CGTGCAGGAGACAGCGCCGACGA 1868 Query 280244 GGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 ||| | | |||||||| | |||| |||| |||| |||||||| |||||| |||||| Sbjct 1869 CCGGTGAGATGTGGAAGCACCACAACCTGCGCGTGGCGTACGTCGCGCAGCACTCTTTCC 1928 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 ||||| | ||| | ||||| |||| | || | | ||||| |||||||||| Sbjct 1929 ACCACGTGGAGCAGCACCTCGACAGCTCGCCGGTCGAGTACATCCAGTGGCGCT 1982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027664810783460