Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq208 536 2e-147 seq69 360 4e-94 >seq208 Length=29794 Score = 536 bits (594), Expect = 2e-147 Identities = 1372/2063 (67%), Gaps = 73/2063 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 |||||||||||| || ||||| || || | ||| || | || |||||||| |||||| Sbjct 11680 CAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGACGTCAG 11739 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | ||| | | || |||| |||||| ||||||||||| Sbjct 11740 CTTGCTGATCGTCGGCTCCGCGATGT----GCAC--------GTTGAGCGACTGGCTCTG 11787 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | || | | |||||| || || |||||||| || | | ||||||| ||||| Sbjct 11788 GCAGATGTA-GGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCC 11846 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || |||||||||| | ||| | | || |||| | | | ||||||||| |||| Sbjct 11847 ACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGC 11906 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CA 244070 | | || | | || |||| |||||| | |||| | || | |||| | Sbjct 11907 CGTGGTCGTGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATACC---GAGCTCGATGA 11963 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | ||||| | ||||||| | | ||||| || | ||||||||||| | || Sbjct 11964 GCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGT 12023 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | ||| ||||||||| ||| |||||||||| |||||||| || || Sbjct 12024 ACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACG 12083 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | |||||||| |||| | |||||| ||| | ||| |||| | | || || | Sbjct 12084 CCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCCT 12143 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || ||||||||| | ||| || | ||| | ||| |||||||||||| Sbjct 12144 TGAGCGCGGCCCAGTCCCAGAGGCC-----GGACGTCG-GCGTGACGCCCCACATGTCGT 12197 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | |||||||| ||||| |||||||||| | | ||| || |||| || Sbjct 12198 ACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCT 12257 Query 244371 GGGCCAGCTTACAGC-TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 || ||| | || | | || | ||| || |||| | ||||||||||| ||||| Sbjct 12258 TCGCGAGC-TCCATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTG 12316 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | |||||||||| | ||| || | | |||||| | ||||| |||| || Sbjct 12317 TTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCG 12376 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || |||||||||||||||||||| || | ||| ||| |||| ||| || ||||| Sbjct 12377 AGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAGCCTCGGGG 12436 Query 244550 ACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG 244609 | ||||| ||||| |||||| ||||||||||||||||| |||| | | || | Sbjct 12437 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATG 12496 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 ||| |||| || ||| ||| ||| | ||| || |||||||| Sbjct 12497 TCGTACAGCTTCTTGAAG------TCGAAGGTCTTGTCGTCG---------TTCACAAAC 12541 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | || |||| | || |||||||| || || ||||| || | ||||||| Sbjct 12542 TTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCA 12601 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | |||| ||||||||| || | ||| ||||| |||| ||| || || |||||| Sbjct 12602 AGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 12661 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||||| | |||||||||||||||| | ||| || ||||||| ||| | ||||| Sbjct 12662 CGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 12721 Query 244850 A-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | ||| | |||||| | | || || |||| |||| || |||||| |||||| Sbjct 12722 ATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTA 12780 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGACG 244967 || |||||| |||||||||||| |||| || |||| ||| | | ||| | || Sbjct 12781 CTGGTGGTACAGCGCCTCGAACTCGTCACCCC--ACGTCGTGTAGAGACCCGGCGCCTCG 12838 Query 244968 -CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||| | || |||||||||||| | ||| || | || |||||| || |||||| Sbjct 12839 TTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGG 12898 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| | || | |||||| || | | | ||| || ||| ||||||| | Sbjct 12899 ATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTG 12958 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || || | || || |||| |||| ||||||| ||||||| ||| | |||| | ||| Sbjct 12959 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCC 13018 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 ||||| ||| ||||| ||||| | | | ||||||| | |||||| | Sbjct 13019 TTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATG 13078 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | |||||| || |||||| ||||| |||||| | | ||| | | || Sbjct 13079 GGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG---TTGGTCGCGCGG 13135 Query 245267 TTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTT 245322 || || || || | || | |||||||| |||||||||| ||||| ||| Sbjct 13136 ATGTTG-TGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTT 13194 Query 245323 GATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGA 245382 || ||||| |||||||| || ||| ||||||| |||||| ||||| || || Sbjct 13195 GAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGA 13254 Query 245383 CAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 |||||| |||| || | ||| | ||||||||| || || | ||||| || ||| ||| Sbjct 13255 CAGCTGCGGGCGCGGCG-TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGC 13313 Query 245442 GGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCA 245501 ||| | | || ||||||||| |||| |||||||||| || |||||| | Sbjct 13314 TTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGA 13373 Query 245502 GGGCGCACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGA 245558 |||| | || | | ||||| ||||| || ||| || || | | | Sbjct 13374 CGGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC---A 13430 Query 245559 GCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGT 245618 | | ||| || ||||||||||||||| |||||||| ||| |||||||| || || Sbjct 13431 GGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGT 13490 Query 245619 GCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGC 245677 | ||| || | || ||| | || ||||| | ||| ||| || ||| | | | | Sbjct 13491 GGATGATCGCCGAGTTGAGGCGGTCCTTGTGCTCCATGA-TGATCTGGTAGACGTCCTCC 13549 Query 245678 GCTATGAGGGGAGCCCTGAGCCCGG---TGTCCGGATTGACGTTGAACCAGAGCCTCTTG 245734 || || || || ||| || |||| | || | ||| | | | |||| || | Sbjct 13550 GCGATCAGCGGCGCCGGCAGACCGGTCTTCTCGTGCTTGTTCTGGTAGAAGAG---CTCG 13606 Query 245735 CACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCC 245794 ||| |||||| | ||||| ||| |||||||| | || | ||||||||| Sbjct 13607 ATGTTCTCTGAGAACAGCTTGTTGGTGTTCTTGTGCAGGTTCGAGATCGAGATGCGCGCC 13666 Query 245795 GCCAACTTGCTGTAGTCGGGGTG 245817 || | |||||| |||||||||| Sbjct 13667 GCGAGCTTGCTAAAGTCGGGGTG 13689 >seq69 Length=49210 Score = 360 bits (398), Expect = 4e-94 Identities = 590/846 (70%), Gaps = 11/846 (1%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || | |||||| || || ||||| ||||| | Sbjct 9038 TCTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCG 8979 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACA 42420 | | ||| | |||| | || | || ||||| | ||| |||| || Sbjct 8978 TCCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCACG 8919 Query 42421 TACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCA 42480 | || || |||||||| ||| ||| ||||| ||||| |||||||| || | | |||| Sbjct 8918 TGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGAACTTCA 8859 Query 42481 TGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 | ||||||||| ||||||||| |||||||| ||||||||||| || || |||| Sbjct 8858 GCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATTGCGATTGAGA 8799 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | ||||| ||||||||| | ||||||| ||||||||||| ||| | || Sbjct 8798 ACATCCACTCGGAGGTGTACTCG---CTGCTCATCGACACGTACATCAAGGACCAGACCG 8742 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || ||| || || ||||| |||||||| |||||| | ||||||||||| ||| Sbjct 8741 AGAAGAACCACCTTCTCCGCGCCATCGAGACGATCCCCTGCGTGCAGAAGAAGGCGCACT 8682 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||||| || ||| ||| | | ||| |||||| |||| | | || || || Sbjct 8681 GGGCGCTTAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCG 8622 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || ||||||||||||||||||||| | ||| ||| ||||||||||||||| || Sbjct 8621 CTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGC 8562 Query 42778 A-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || ||||| || |||| |||||||||||| || ||| | |||||||| || Sbjct 8561 GCGGCCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTGATCTCGCGTGACGAGGGTCTC 8503 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | ||||| || ||||| |||| ||||| | ||| |||||| | | || Sbjct 8502 CACTGCGACTTCGCGTGCCTGCTGTACTCGA---AGCTCGCCAACAAGCTCCCTGAGTCT 8446 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || ||| | ||||| || ||||| | ||||||||||||||| || | | ||| Sbjct 8445 CGCATCCACGAGATCATTCGCGATGCCGTTGCGATCGAGAAGGAGTTTGTCCAGGACTCG 8386 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| || |||| |||||| |||||||||| ||||||| ||| | | Sbjct 8385 CTCCCGGTGGAGCTCATCGGTATGAACTCGTCCCTCATGTGCCAGTACATTGAGTTCTGC 8326 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||| | ||||| | | | ||| | | ||||||| | || ||| ||| Sbjct 8325 GCCGATCGCCTCCTCCACGCGCTTGGTGTTGCCAAGATCTACAAGGTGTCGAACCCGTTC 8266 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | |||||| | |||||||||||||||| |||||||||||||| | | Sbjct 8265 GACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGC 8206 Query 43137 GACTAC 43142 || ||| Sbjct 8205 GAGTAC 8200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944185036625600