Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq208 253 2e-62 seq69 197 2e-45 seq51 98.7 1e-15 >seq208 Length=29794 Score = 253 bits (280), Expect = 2e-62 Identities = 1182/1847 (64%), Gaps = 77/1847 (4%) Strand=Plus/Plus Query 113580 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 113633 |||| | |||||| | |||| ||||||||||| |||||||| || |||| ||||| Sbjct 11655 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCC 11714 Query 113634 AGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 113693 | ||||| | ||||| || | || |||| || || || | ||| | ||| | Sbjct 11715 ACGCATAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGA 11774 Query 113694 TACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCA 113753 ||| || |||| || || || || || |||||||| | ||| ||||| Sbjct 11775 GCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCT 11834 Query 113754 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 113810 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 11835 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 11893 Query 113811 TATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 113867 || || | ||||| | | || || || | || || || | ||||| Sbjct 11894 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTGCGCACCTCGGGCGTCCAGA 11948 Query 113868 GACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGA 113927 ||| | || |||| |||| || || | ||| || || | ||||| || || | Sbjct 11949 TACCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 12008 Query 113928 GGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 113987 | ||| | || || ||||||||| | ||||| | |||| ||||| |||| || Sbjct 12009 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGA 12068 Query 113988 TTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTT 114047 | || ||||| || || || ||||| || || | || || ||| || | ||| | | Sbjct 12069 TCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACT 12128 Query 114048 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC-TCCCCCTG---- 114102 | | || ||||||| ||| ||||||| || || | | || | || Sbjct 12129 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAG---AGGCCGGACGTCGGCGTGACGC 12185 Query 114103 -CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||| ||| || | | | || || ||||| | | |||| | Sbjct 12186 CCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACG 12245 Query 114162 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 |||| | ||| ||| | || ||| ||||| | || || |||| |||| Sbjct 12246 GGCCGTGCTCCTTCGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCT 12302 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA 114277 | || ||| || | | |||||||||| ||||||||| || | || | Sbjct 12303 CGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAG 12360 Query 114278 -ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 || || | ||||||||||| || || |||| ||| || ||||| || | || || Sbjct 12361 GATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC- 12419 Query 114337 CTTTCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 |||| | | ||| | || || | || | ||||| ||| | || || || Sbjct 12420 --TTCGCTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCG 12477 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 114453 ||||| ||||| ||||| || | ||||| | | | || || | | || || || Sbjct 12478 CGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTT 12534 Query 114454 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 114513 ||| |||| | || ||||| ||||| || || ||||| | | ||| || || Sbjct 12535 CACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGT 12594 Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTG 114570 |||||| | | || || | || ||| || ||||| | ||||| || Sbjct 12595 GTACTCAAGCACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTG 12651 Query 114571 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 || ||||| ||| |||| |||||||| |||||||| ||||| |||||||| | || Sbjct 12652 GTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTG 12711 Query 114631 GGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGC 114685 |||| ||| || || ||||| || |||| || | | | | ||| || || Sbjct 12712 CGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGG 12766 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAG 114744 ||||| |||||||| ||| || || || ||||| |||||| ||| | | | |||| Sbjct 12767 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGT-AGAG 12825 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 || || |||| | |||||||| || ||| | || ||||||| |||||||| Sbjct 12826 ACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCAT 12885 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCC 114863 ||| || || |||||||| | || |||||||||| || ||| || || | | | Sbjct 12886 GAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGC 12944 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || | || | || || | ||| || ||||||||||| |||||||||| Sbjct 12945 CGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACA 13004 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 ||||| || ||||| || || ||| |||| | ||||| | ||| ||| | || | Sbjct 13005 TCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGA 13064 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGA 115038 | ||||| ||||| || | || || | || ||| || || || || || ||||| Sbjct 13065 ACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG- 13123 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 || | || | || | || | | ||| || || || |||||||| ||||| Sbjct 13124 -TTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCA 13182 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||||| | |||| || | ||||| || ||||||||||| |||| | |||| || Sbjct 13183 AGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAG 13242 Query 115159 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 |||||| ||||| || || | || || || |||||||| || || || |||||||| Sbjct 13243 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTG 13302 Query 115219 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 |||| | | ||| ||||| | ||||| ||||| | ||||| ||||| | | Sbjct 13303 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTT 13362 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCA 115336 ||| || |||| | ||| |||| || ||| | || ||| | | || | | | ||| Sbjct 13363 GTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCA 13420 Query 115337 TCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 ||| | | ||||||| |||||| | ||||||| ||||| || Sbjct 13421 CCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 13467 >seq69 Length=49210 Score = 197 bits (218), Expect = 2e-45 Identities = 399/581 (69%), Gaps = 16/581 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 8200 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 8259 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 8260 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACACCAAGCGCGTGGAGGAGGC 8318 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 8319 GATCGGCGCAGAACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCA 8378 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||||||| |||| || ||| ||||||| || | ||||| || || | ||| ||| Sbjct 8379 CCGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGT 8438 Query 125997 GAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA----A 126050 | ||| | | | || | | ||| || ||| |||| | | |||| | Sbjct 8439 GGATGCGAGACTCAGGGAGCTTGTTGGCG---AG-CTTC--GAGTACAGCAGGCACGCGA 8492 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || |||||||||||||||||| ||||| || || |||||||||| || || |||| Sbjct 8493 AGTCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCA 8552 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| || |||||||| | |||||| || | || || || |||||||||||||| |||| Sbjct 8553 TGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 8612 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCAC 126229 | ||| |||||||| | || |||||| || || | ||||| | | ||| ||||| Sbjct 8613 CAACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCAC 8671 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 126289 || | |||||| |||||||| |||| | || |||| |||| ||| || | || Sbjct 8672 TTAAGCGCCCAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGAAGG 8731 Query 126290 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | ||||| || | | || ||||||||| | || ||||| Sbjct 8732 TGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 8772 >seq51 Length=53042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 |||||||||||||||| ||| || ||||| ||||| || ||| | ||||| ||| || Sbjct 41604 GGGAACACACCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 41663 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 172930 || || || ||||| |||| || ||||| || ||| || | ||||| || || | | Sbjct 41664 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCCGTACCGGCGTAG 41723 Query 172931 TTCGCATCGTCCAACTTGGGAATACCAGT 172959 ||||||||||| | ||| || || || || Sbjct 41724 TTCGCATCGTCAAGCTTTGGGATTCCTGT 41752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597256082024800