Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq208 453 1e-122 >seq208 Length=29794 Score = 453 bits (502), Expect = 1e-122 Identities = 1227/1865 (66%), Gaps = 64/1865 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||||||||||||||||| | | ||||| | Sbjct 13473 TACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGGCAAG 13414 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| ||| || | ||||||||||| |||| || ||| |||||| Sbjct 13413 GTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCCGTCGGCATCCACAAGCACGAC 13354 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATG- 93891 || |||| | | || | | ||| ||||| | ||| || | || | Sbjct 13353 ATCGACGCCGC--GCT---CGAGACGTACGAGTACATGTCG--CAA-AGCTTCTTCACGC 13302 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 || || ||||| ||||||||||| || || ||| || ||| |||| ||||| |||| Sbjct 13301 ACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCC 13242 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||||| ||| || || | |||| |||||| | || || Sbjct 13241 TGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCTT 13182 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || | || || || ||||| | ||||| ||| || | || || | | Sbjct 13181 GCATCTCCAAGTGGGCCGGCGGCATCGGTGTTAGTGTGCACAACATCCGCGCGACCAACT 13122 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | ||||||||||| || || ||| | || ||||||||||| || ||||| || || |||| Sbjct 13121 CGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCA 13062 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || ||||||| || ||||| |||||||| || | | | ||||| || |||||| | | Sbjct 13061 ACGACACGGCGCGTTATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCGCGATGT 13002 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||||| ||| | | ||| ||||||| ||||||||||||| Sbjct 13001 ACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCA 12942 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 |||| ||| | | || | || ||||||||||| | ||| | || || || || |||| Sbjct 12941 ACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTGTTCATGA 12882 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | ||||| ||| ||| || ||||| || || || || || || || || || | Sbjct 12881 AGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTCT 12822 Query 94370 --CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 |||||| | || || | || || | |||| | |||| | ||| ||||| Sbjct 12821 ACACGACGTGGGGTGA-CGAG-TTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCC 12765 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||| ||| |||| | || ||| | | Sbjct 12764 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 12705 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 ||||||| ||||| ||||| | | ||||||||| |||| |||||| ||||||||| Sbjct 12704 AGACGGGCACGCCGTACATGCTCTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGA 12645 Query 94547 ACCTCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 ||||||| |||| ||||| || || ||| |||| | | ||||| || || | Sbjct 12644 ACCTCGGCACGATC---CGCTCGAGCAACCTCTGCTGCGAGGTGCTTGAGTACACGTCGC 12588 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATG 94663 | |||||| | || ||||| ||||| | |||||| ||||||| || ||| | | Sbjct 12587 CCGACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG---AACG 12531 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGG 94723 | ||| | | ||||| | || |||| || || | |||| | | Sbjct 12530 ACGACAAG---------ACCTTCGACTTCAAGAAGCTGTACGACATCAC--CAAGG-TCG 12483 Query 94724 TCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 || | ||||| |||| ||| ||||||| |||| |||||| |||| ||||| ||| Sbjct 12482 TCACGCGCAACCTCAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCTGAGC 12423 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 |||||| || || || |||||||||||||| |||||| ||||||||||| | Sbjct 12422 GAAGCAACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTTCA 12363 Query 94841 TGATGATGCGTCTGCCCTACGACTCTG---TCGACGCGGC---GGGTTTGAATTTGAACA 94894 | | ||| | ||||| | || ||||| ||| | | || ||||| Sbjct 12362 TCCTCATGGG------CTACGCGTTTGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACA 12309 Query 94895 TATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACG 94954 | ||||| | | || | ||| || ||| | || | | | || | ||| Sbjct 12308 TCTTCGAGACGCTGTACTTCGGCGCGATGGAGGCCTCGATGGAGCTCGCGA---AGGAGC 12252 Query 94955 GCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACC 95014 ||| || ||| | | || || ||| || ||||||| || |||| |||| Sbjct 12251 ACGGCCCGTACGCCAGCTACGAGGGCTCACCCGTGAGCAAGGGCATCTTCCAGTACGACA 12192 Query 95015 TCTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTA 95071 | ||||| || | || | || || || | ||||||| || || || || Sbjct 12191 TGTGGGGCGTCACGCCGACGTCCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCG 12132 Query 95072 TCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGC 95131 | |||||||| ||| ||||||| | || || ||||| ||||| || || |||| Sbjct 12131 CGCAGTACGGTGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGC 12072 Query 95132 AGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGG 95191 ||||||| ||||||||||||||| |||| || ||||| ||||| |||||||| | || | Sbjct 12071 AGATCCTGGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCG 12012 Query 95192 TGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGG 95251 |||| || || || ||| | || | |||||| |||| | ||| || | || | Sbjct 12011 TGCTTGCAGGCGAGTTCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCG 11952 Query 95252 GTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACA 95311 || | ||| | |||| ||||| | || | || | ||||||| || |||||| Sbjct 11951 GTATCTGGACGCCCGAGGTGCGCAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACG 11892 Query 95312 TCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | | || ||||| | | | |||| | |||||||| |||||||||||| |||| Sbjct 11891 TGCGCGTGATCCCGGATGCCGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 11832 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | ||||| || |||| |||||| ||| |||||||||||| Sbjct 11831 AGGCCGTGCTCGATATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCA 11772 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || || ||||| | | | || | ||||||||| ||||| | ||||| Sbjct 11771 ACGTGCACATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTATGCGTGGA 11712 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 |||||||| ||||| |||||||| || |||| | | | || ||||| || | || | Sbjct 11711 AGAAGGGTCTTAAGACGGGTATGTACTACCTGCGCAGCCGACCGAAGGCCGATGCGATCC 11652 Query 95552 AGTTC 95556 ||||| Sbjct 11651 AGTTC 11647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494642436437600