Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq208 298 5e-76 seq69 167 2e-36 >seq208 Length=29794 Score = 298 bits (330), Expect = 5e-76 Identities = 1140/1756 (65%), Gaps = 39/1756 (2%) Strand=Plus/Plus Query 152722 TGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAG 152781 |||||| || ||||| ||||| || || || ||||| || ||| || || | Sbjct 11676 TGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGACG 11735 Query 152782 TCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGA 152841 ||| | | |||||| | ||| | | || || | ||| |||||||| ||| Sbjct 11736 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 11795 Query 152842 AAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGTT 152900 | ||| |||||||| ||||| || | || | | || ||| || |||||||| | || Sbjct 11796 AGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGC-TTGATCTCCCACACCGTC 11854 Query 152901 TTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT-G 152959 |||||| | || ||| |||||| || | | |||||| | ||||| | || | Sbjct 11855 TTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCG 11914 Query 152960 TGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGAT 153019 |||| | | ||| || | |||||||| | | || | ||||| || | || Sbjct 11915 TGCAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTTCAT 11973 Query 153020 CAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGC 153078 || ||||| ||| || | | |||| |||||| || | ||| || | || | ||| Sbjct 11974 CAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGG 12032 Query 153079 TAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCA 153138 | ||||| || || | || ||||| ||||| || || || || || | || ||||||| Sbjct 12033 TCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGCA 12092 Query 153139 TGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCC 153197 | ||| | || || || || |||| |||| | || ||| | | |||| | ||| Sbjct 12093 TCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGG-CCTTGAGCGCG 12151 Query 153198 TGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAACACTCCT 153254 ||| ||||| || | |||| | || || ||||||||||||||| || | || Sbjct 12152 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 12211 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCA 153313 || |||| ||| | | | ||| ||||| | | || | | || || || Sbjct 12212 TTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCG-CGAGCTC-CA 12269 Query 153314 GCTAG-CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 | || |||| | |||||| |||| | || ||| ||| | || ||||| || | Sbjct 12270 TCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGG 12329 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | || |||||||| ||| || || || | || ||||| || |||||||| | | Sbjct 12330 CCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGC 12389 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGA 153491 ||| |||||| || || || | |||||| ||| || |||| || || |||| Sbjct 12390 CGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAGC-CTCGGGGATCGGGTAGTAG 12448 Query 153492 TTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTC 153551 ||| ||||| | ||||||||||||||| || || || || || | | || ||| Sbjct 12449 TTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC 12508 Query 153552 TCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 | ||| || ||||| | |||||| | | | | || || || || ||||| || Sbjct 12509 TTGAAGTCGAAGGTCTTGTCGTCGTT-CACAAACTTGGA--CAGCGCGATGGACGCGAGG 12565 Query 153612 TTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCT 153670 || || || || ||| |||| || || |||||| | | |||| |||||||||||| Sbjct 12566 TTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCAAGCACCTCGCAGCAGAGGTTGCT 12624 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 | || ||| | || ||||| || ||||| ||||||| ||| ||| |||| Sbjct 12625 CGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAG 12684 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCTATGCAGGTCCTG 153787 ||||||||| ||| ||||||| |||| |||| ||| |||| || | ||| Sbjct 12685 CATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---CTG 12741 Query 153788 CGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 ||| || | | || || ||||||||||| |||||| | | |||||| ||| || Sbjct 12742 CGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAA 12801 Query 153848 CTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACA 153906 |||||| || | | || | ||| || || || | ||| || | ||| |||| Sbjct 12802 CTCGTCACCCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACT 12860 Query 153907 TATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGT 153966 ||| ||| | ||||| |||||||||||| || | ||| | |||||| | ||| | Sbjct 12861 CGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGAT 12920 Query 153967 C--GCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA-CGCTATAGA 154023 | |||||| |||| ||| ||| ||| || || | ||| | | | | ||| Sbjct 12921 CACGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AGA 12977 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---CCCT 154080 ||||||||||||| || || | ||| | || | | || || ||||| ||| |||| Sbjct 12978 TGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCT 13037 Query 154081 GATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGG 154140 |||| || | ||| || | | |||||| ||||||| |||||| | |||||| | | | Sbjct 13038 GATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACG 13097 Query 154141 TGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200 |||||| || ||| | | | ||||| | | ||||| |||| || | Sbjct 13098 AGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACACTAACACCGA 13157 Query 154201 TGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGA 154260 |||||||| | |||| || ||| |||||| | ||||| |||||||| |||| Sbjct 13158 TGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGA 13217 Query 154261 TGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCG 154320 | ||||| | | |||||| ||| ||||| ||| ||||| |||| || | Sbjct 13218 TCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGG 13277 Query 154321 CCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 | || || || || |||||||||| || | |||| ||| |||||| | Sbjct 13278 CGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCT 13337 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 ||| ||| | ||||| || | ||| ||||||| |||||||||| | ||| |||| Sbjct 13338 CGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGAATCATCTGCT 13397 Query 154441 GCGGACGTTCGGCGAC 154456 |||| || || ||||| Sbjct 13398 GCGGGCGCTCAGCGAC 13413 >seq69 Length=49210 Score = 167 bits (184), Expect = 2e-36 Identities = 506/759 (67%), Gaps = 31/759 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| || |||||||||||| | ||||||||||| ||| ||| ||||||| | Sbjct 8942 ACGAGCGCTACTTCATCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCA 8883 Query 52153 ACATTAACCTCATCGA-GTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || |||||| ||| | || | |||||| | || | || | ||||||| | || Sbjct 8882 ACGAGAACCTCG-CGATGAACTTCAGCAGCG--AGGTGCAGGTTCCTGAGGCGCGTTGCT 8826 Query 52210 TTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 | ||| || || | ||| || ||| | | ||| ||||| ||||| |||||||| Sbjct 8825 TCTATGGCTTCCAGATTGCG-ATTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATC 8767 Query 52269 GAGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-T 52327 || | || || || || |||| || || || || ||||| ||| | Sbjct 8766 GACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAG-ACGAT 8708 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCA 52386 || ||||| | || ||||| || ||||| | |||||| ||| ||| | | ||| Sbjct 8707 CCCCTGCGTGCAGAAGAAGGCGCACTGGGCGCTTAAGTGGTGCGACTCGCGCCGC-GCCG 8649 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 || | |||||||| || || || ||||| || |||||| | || || || ||| | Sbjct 8648 CGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGT 8589 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | | ||||| | | || | | ||| | ||||| ||||| | ||| |||| Sbjct 8588 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACG 8529 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || |||| ||||| ||||| || || ||| ||||| |||||||| ||| || || Sbjct 8528 AGCTGATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGC 8469 Query 52567 GCGTGACCGAAAAAT---TGGAT-TCGGA--CACGATCCTGAGCATGTTCAAGGAGGCGG 52620 || | | || | || | ||| | ||||| || ||| | || || | Sbjct 8468 TCGCCAAC--AAGCTCCCTGAGTCTCGCATCCACGA----GATCATTCGC---GATGCCG 8418 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | || ||||| ||||||||| | || | |||| ||||| ||||| | || |||||| Sbjct 8417 TTGCGATCGAGAAGGAGTTTGTCCAGGACTCGCTCCCGGTGGAGCTCATCGGTATGAACT 8358 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-G 52739 || ||||||| ||||||| ||||| || ||||| || | ||| || | Sbjct 8357 CGTCCCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTG 8298 Query 52740 CAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 ||||| | || ||| | ||| || ||||| || | ||| ||| || ||||| | Sbjct 8297 TTGCCAAGAT-CTACAAGGTGTCG-AACCCGTTCGACTGGATGGACATGATCTCGCTCCA 8240 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||| ||||||||||| || |||||||| Sbjct 8239 GGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 8201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496181385163200