Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq208 138 1e-27 >seq208 Length=29794 Score = 138 bits (152), Expect = 1e-27 Identities = 1048/1658 (63%), Gaps = 62/1658 (4%) Strand=Plus/Plus Query 145757 TGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCG 145816 ||||||| |||||||| || ||||| || |||| ||||| || ||||| ||| || Sbjct 11676 TGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGACG 11735 Query 145817 ACA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 || | | || ||| || || |||| || || || || |||||||| || Sbjct 11736 TCAGCTTGCTGAT--CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGAT 11793 Query 145875 GAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGG 145933 | | || ||| |||||||||||||| || | || | ||| || || ||||| | | Sbjct 11794 GTA-GGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCG 11852 Query 145934 TTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTT 145993 | || | ||||| ||| | || || || | ||||||||| || || | | Sbjct 11853 TCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGT 11912 Query 145994 CGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGA 146053 || || || | |||||||| || || || | || | || | ||| |||| | Sbjct 11913 CGTGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTTCA 11972 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 | || |||| ||| || | | |||||||| || || ||||| | |||| |||| Sbjct 11973 TCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGG 12032 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 | ||||||||||||| |||||||||||| || || |||||||| |||| || || |||| Sbjct 12033 TCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGCA 12092 Query 146174 TGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGT-AGTTTG 146232 | ||| | ||||| ||||| | ||| |||| || | | | || | || | Sbjct 12093 TCGGCGCGAGCAGCAGCGAGTTGCGCACACCGT-ACTGCGCGACGCTGGCCTTGAGCGCG 12151 Query 146233 GACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCG 146292 | ||| | ||| | ||| || || | ||||||| || | |||| Sbjct 12152 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 12211 Query 146293 CGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAG 146352 | || ||| |||||| | || || |||| ||| || || || || Sbjct 12212 TTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CAT 12270 Query 146353 CTA-GCTTCCA--GAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CT 146408 | | || |||| | |||| ||||| | ||||| ||| | | ||||| |||| | Sbjct 12271 CGAGGCCTCCATCGCGCCG--AAGTACAGCGTCTCGAAGATGTTCTTGTTGA-GCTCGCG 12327 Query 146409 GGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTAT 146468 |||||| ||||| || | | | | | || | || ||||| ||||||||||| | Sbjct 12328 GGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCAC 12387 Query 146469 CCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTG 146528 |||| || | |||||||| | ||| || | |||| | | | || |||| Sbjct 12388 GCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAGCCTCGGGGATCGGGTAGTA 12447 Query 146529 GTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAG 146588 |||| ||||||||| ||||||||| || ||| ||| | || || | | |||| Sbjct 12448 GTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTT 12507 Query 146589 GACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAA 146648 |||| || || || || | |||| || ||||| | ||||| || || | Sbjct 12508 CTTGAAGTCGAAGGTCTT-GTCGT--CGTTCACAAACTTGGACAGCGCGATGGACGCGAG 12564 Query 146649 GTTACATACGGCAGTCTCGTC-CTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707 ||| || || || |||||| | || |||| | | |||| ||||||||||| Sbjct 12565 GTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCAAGCACCTCGCAGCAGAGGTTGC 12623 Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGT 146764 | | ||| |||| | || | |||| | |||| |||||| | |||||||| Sbjct 12624 TCGAGCGGATCGTGCCGAGGTTCTGCTGGT---TCGACTTGCGGTTGCACGAGTCCTTGT 12680 Query 146765 AGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT- 146823 ||||||||||||| || || |||| | | ||||| ||| | || || | || Sbjct 12681 AGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGAT--CGCGAACCAGAGCTG 12738 Query 146824 CTGGCCTTTACTTGTCTTTCGTAC-AGTTTATTCTTTTCGTATTTCTCGTACAATATTTC 146882 ||| | | ||||| || | | | ||||| | | ||||| || Sbjct 12739 CTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTC 12798 Query 146883 AAAACTAG-AACCGTAC-TCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGAC 146940 |||| | ||| || |||| | ||| || || || || || |||||||| | Sbjct 12799 -GAACTCGTCACCCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTC 12856 Query 146941 CATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCA-AAGGCCCAG--- 146996 || || || ||| ||||| | ||| |||| |||||| ||||| | || || Sbjct 12857 CACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAG 12916 Query 146997 -CATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACA 147054 |||| |||| || || | |||| | || || | | || | | || ||||| Sbjct 12917 AGATCA---CGCGCGCGGTGCAG--CTCGTTG-CCGTGGTTCTTCTTGAGGTCGAGGAAC 12970 Query 147055 TCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCG 147114 ||| | || || | ||||| ||||||| ||| |||| | ||| || ||||||||| Sbjct 12971 TCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCG 13030 Query 147115 ---CCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCG 147171 |||||||| || | ||| || ||| ||||| || || | ||||| |||||||||| Sbjct 13031 CCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCG 13090 Query 147172 CCGGA------TTTTGTGGTGCCGTTGTA----TTG--AGCGCTGACGCTTTGCACGCTC 147219 || || ||| || | |||| ||| |||| || | | ||||| || Sbjct 13091 TTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACACTA 13150 Query 147220 AGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATG 147279 | |||| || ||| || || || || ||||| ||| | | || | |||||| Sbjct 13151 ACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATG 13210 Query 147280 CCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACAC 147339 || ||||| ||| ||||| ||| ||||||| ||||| ||| || || || | Sbjct 13211 CCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGC 13270 Query 147340 GTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAA 147377 ||||| || |||||||| || | ||||||||||| Sbjct 13271 GTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAA 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475423174494400