Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq208 132 4e-26 >seq208 Length=29794 Score = 132 bits (146), Expect = 4e-26 Identities = 294/436 (67%), Gaps = 9/436 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | |||||||||| | ||| | ||| | | Sbjct 13416 AAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCCGTCGGCATCCACAAGCAC 13357 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 13356 GACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 13297 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || ||||| |||||||||| | || ||| |||| ||||| || ||||| Sbjct 13296 ACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 13237 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || |||||||| || | | ||||| | || Sbjct 13236 GCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCTTGCATC 13177 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 ||||| | | ||||||||| || || | |||||| || | | | || || || Sbjct 13176 TCCAAGTGGGCCGGCGGCATCGGTGTTAGTGTGCACAACATCCGCG--CGACCAACTCGT 13119 Query 123197 -CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| |||||||||| || | ||| Sbjct 13118 ACATCCGCGGCACGAACGG-CTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAAC 13060 Query 123255 AACGCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| | || || ||| ||||| || ||||| ||| || | ||||| || Sbjct 13059 GACACGGCGCGTTATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCGCGATGTAC 13000 Query 123312 CTAGAACCGTGGCACG 123327 || || |||||||||| Sbjct 12999 CTGGAGCCGTGGCACG 12984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 200/295 (68%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 124019 CGGCGCTTTGGAGGCGA-GCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACG 124077 |||||| ||||||| | || || || ||||| |||||| |||||| || |||| Sbjct 12289 CGGCGCGATGGAGGCCTCGATG-GAGCTCGCGAAGGAGCACGGCCCGTACGCCAGCTACG 12231 Query 124078 CGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAA 124137 |||| || | |||| || || || ||||||||||||||| | || ||||| Sbjct 12230 AGGGCTCACCCGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGT 12171 Query 124138 ATT---TGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACT 124194 | ||||||||| || | || || | || | ||||| |||| |||| Sbjct 12170 CCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGTGTGCGCAACT 12111 Query 124195 CGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAAT 124254 ||||| || | ||| ||||||||||| | || || || || | || |||||||| | Sbjct 12110 CGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTGGGCAACAACGAGT 12051 Query 124255 CCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTT 124309 | ||||||||||||| | ||| ||||| || || ||| | || ||||| || Sbjct 12050 CGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTT 11996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451929410477600