Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq208 269 3e-67 seq69 187 3e-42 seq51 102 1e-16 >seq208 Length=29794 Score = 269 bits (298), Expect = 3e-67 Identities = 1192/1859 (64%), Gaps = 71/1859 (4%) Strand=Plus/Plus Query 115541 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 115594 |||| | |||||| | |||| ||||||||||| |||||||| || |||| ||||| Sbjct 11655 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCC 11714 Query 115595 AGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 115654 | ||||| | ||||| || | || |||| || || || | ||| | ||| | Sbjct 11715 ACGCATAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGA 11774 Query 115655 TACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCA 115714 ||| || |||| || || || || || |||||||| | ||| ||||| Sbjct 11775 GCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCT 11834 Query 115715 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 115771 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 11835 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 11893 Query 115772 TATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 115828 || || | ||||| | | || || || | || || || | ||||| Sbjct 11894 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTGCGCACCTCGGGCGTCCAGA 11948 Query 115829 GACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGA 115888 ||| | || |||| |||| || |||| ||| || || | ||||| || || | Sbjct 11949 TACCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 12008 Query 115889 GGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 115948 | ||| | || |||||||||||| | ||||| | |||| ||||| |||| || Sbjct 12009 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGA 12068 Query 115949 TTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCC 116008 | || || || || || || ||||| || || | || || |||||| | ||| | Sbjct 12069 TCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACT 12128 Query 116009 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCC 116065 | | || ||||||| ||| ||||||| || | ||| | | ||| Sbjct 12129 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCC 12188 Query 116066 ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGC 116125 |||| || |||||| ||| || | | | | || || ||||| | | | || |||| Sbjct 12189 ACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGC 12248 Query 116126 CCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | | ||| ||| | || ||| ||||| | || || |||| ||||| | Sbjct 12249 CGTGCTCCTTCGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCTCGA 12305 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-AT 116240 | ||| || | | |||||||||| ||||||||| || | || | || Sbjct 12306 AGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGAT 12363 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | ||||||||||| || || |||| ||| || ||||| || | || || | Sbjct 12364 GAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---T 12420 Query 116301 TCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 ||| | | ||| | || || | || | ||||| ||| | || || || || Sbjct 12421 TCGCTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGT 12480 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 ||| ||||| ||||| || | ||||| | | | || || | | || || || || Sbjct 12481 GACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCAC 12537 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | |||| | || ||||| ||||| || || ||||| | | ||| || ||||| Sbjct 12538 AAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTA 12597 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATT 116534 ||| | | || || | || ||| || ||||| | ||||| || || Sbjct 12598 CTCAAGCACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTT 12654 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| ||| |||| |||||||||||||| || ||||| |||||||| | || || Sbjct 12655 CGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGA 12714 Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCC 116649 || ||| || || ||| | || |||| || | | | | ||| || || ||| Sbjct 12715 CTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCC 12769 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCC 116708 || |||||||| ||| || ||||| ||||| |||||| || | | | |||| || Sbjct 12770 TCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGT-AGAGACC 12828 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || |||| | || ||||| || ||| | || ||||||| ||||||||||| Sbjct 12829 CGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAA 12888 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCT 116827 || || |||||||| | ||| |||||||||| || ||| || || | | || | Sbjct 12889 CAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGT 12947 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | || | || | || || | ||| || ||||||||||| |||||||||| || Sbjct 12948 GGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCG 13007 Query 116888 CGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 ||| || |||||||| || ||| |||| | ||||| | |||||| |||| || | Sbjct 13008 CGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACA 13067 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTT 117002 |||| ||||| || | || || | || ||| || || || || || ||||| || Sbjct 13068 CGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TT 13125 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | | || | || | ||| | | ||| || || || |||||||| ||||| || Sbjct 13126 GGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGC 13185 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 ||||| | |||| || | ||||| || ||||||||||| |||| | |||| ||||| Sbjct 13186 GCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAA 13245 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| ||||| || || | || || || |||||||| || || || |||||||| | Sbjct 13246 GCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGT 13305 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 ||| | | ||| ||||| | ||||| ||||| | | | | ||||| | | ||| Sbjct 13306 GAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTG 13365 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCATCG 117300 || |||| | ||| |||| || ||| | || ||| | | || | | | ||| || Sbjct 13366 GATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCG 13423 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | | ||||||| |||||| | ||||||| ||||| ||| | | ||| |||| Sbjct 13424 ACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTC 13482 >seq69 Length=49210 Score = 187 bits (206), Expect = 3e-42 Identities = 396/583 (68%), Gaps = 20/583 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 8200 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 8259 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 8260 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACACCAAGCGCGTGGAGGAGGC 8318 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 8319 GATCGGCGCAGAACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCA 8378 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||||| |||| || ||| ||||||| || | || || || || | ||| ||| Sbjct 8379 CCGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGT 8438 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 | || | | | || | | ||| || ||| |||| | ||| | | Sbjct 8439 GGATGCGAGACTCAGGGAGCTTGTTGGCG---AG-CTTC--GAGTACAGCAGGCACGCGA 8492 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || |||||||||||||||||| ||||| || || |||||||||| || || |||| Sbjct 8493 AGTCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCA 8552 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 8553 TGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 8612 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCAAACC 127700 | ||| |||||||| | | ||||||||| || || |||| | | || ||| Sbjct 8613 CAACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGC---GAGTCGCACC 8669 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 |||| | |||||| || ||||| |||| | || |||| |||| ||| || | | Sbjct 8670 ACTTAAGCGCCCAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGAA 8729 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||||| || | | || ||||||||| | || ||||| Sbjct 8730 GGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 8772 >seq51 Length=53042 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 |||||||||||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 41604 GGGAACACACCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 41663 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| |||| || ||||| || ||| || | ||||| || || | | Sbjct 41664 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCCGTACCGGCGTAG 41723 Query 176951 TTCGCATCGTCCAACTTGGGAATACCAGT 176979 ||||||||||| | ||| || || || || Sbjct 41724 TTCGCATCGTCAAGCTTTGGGATTCCTGT 41752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613407044949600