Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq208 230 4e-55 seq69 114 2e-20 seq513 91.5 2e-13 >seq208 Length=29794 Score = 230 bits (254), Expect = 4e-55 Identities = 501/735 (68%), Gaps = 15/735 (2%) Strand=Plus/Plus Query 203878 GCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGA 203937 ||| | ||| |||||||| || ||||| || ||||||| |||| | || | ||||||||| Sbjct 11674 GCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGA 11733 Query 203938 AGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGAT 203997 | ||| ||||| | | || || || ||||| | ||| || |||||||| ||| ||| Sbjct 11734 CGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGAT 11793 Query 203998 GAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCG 204056 | | |||||| || || |||||||||| || | || ||||||| ||||||||||||| Sbjct 11794 GTA-GGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCG 11852 Query 204057 TCTTGAACACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATC-GAGCCGTTG 204115 ||||| || || | | | || | | | ||||| ||| | ||||||| | Sbjct 11853 TCTTGTACTTCTCCTTCACGGCATCCGGGATCACG-CGCACGTTCTGCACTGAGCCGTGG 11911 Query 204116 TCGGCCATCAGTCTCATC-CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCG 204174 ||| || | ||| | | | ||| | ||| || || | | ||| |||||| Sbjct 11912 TCGTGCAGGA-TCTGGTTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTT 11970 Query 204175 CACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTT 204234 || ||||| ||| | |||| || || || | ||||| | ||| || ||| ||| Sbjct 11971 CATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTT 12030 Query 204235 GTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGG 204294 | | ||||| || |||| || |||||||||||| | ||||| ||||| ||||| || Sbjct 12031 GGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGG 12090 Query 204295 CATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGA 204354 ||| || || || ||||| ||||||||||||||||| | ||| ||| ||| || | Sbjct 12091 CATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCCTTGAGCGC 12150 Query 204355 GGTCCAGTCGTGCA--TCGCAC-TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || |||||| | || || | || | ||||||||||||||| |||| |||||||| Sbjct 12151 GGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCC 12210 Query 204412 TTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA 204471 | || || || ||||| ||| | | || || | ||| | || |||| Sbjct 12211 CTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTCCAT 12270 Query 204472 CGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GG 204530 |||||| |||| ||| |||||| ||||| ||||| | | || | || || || Sbjct 12271 CGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTG-TTGAGCTCGCGGG 12329 Query 204531 CCTC--CGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCAC 204588 |||| || || |||||||| |||| | | ||| ||||||| | |||||||| Sbjct 12330 CCTCGTCGCTC--TCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCAC 12387 Query 204589 TCCGATTCCCAACGG 204603 ||||| || | ||| Sbjct 12388 GCCGATGCCGATCGG 12402 Score = 113 bits (124), Expect = 7e-20 Identities = 442/677 (65%), Gaps = 26/677 (4%) Strand=Plus/Plus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| ||||||||||| || ||||||||||| | |||| ||||| | || |||| Sbjct 12646 CTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 12705 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACG 205045 ||||| || ||| || || | ||| | | |||| | || ||||| || Sbjct 12706 GATCTGCGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCG---CG 12761 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105 | |||| | | |||||| | |||||||||| | || || ||| |||||| Sbjct 12762 CGCGGCCCTCGCG-CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC--CACGTCG 12818 Query 205106 ATCAG---CCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACC 205162 || ||| | | | || ||| || | ||| |||| | | | | || Sbjct 12819 TGTAGAGACCCGGCGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACG 12877 Query 205163 CTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG 205222 | || ||| ||||| ||| |||||||| |||| || |||||||| || | | | | Sbjct 12878 CGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGG-TGCAG 12936 Query 205223 -TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCT 205280 |||| || ||||||| || | ||| || || || | ||||||||||||||||||| Sbjct 12937 CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCT 12995 Query 205281 CTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCA 205340 | | ||| || | | ||| | ||| |||||||| ||||| || | | Sbjct 12996 CCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCG 13055 Query 205341 TCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGA 205400 | ||||||| || |||||||| ||||| || ||||| | | |||||||||| | || Sbjct 13056 TGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGA 13115 Query 205401 TGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGG 205460 || |||| || | | |||| | | || || ||||| | ||||||| Sbjct 13116 TGTACGAGTTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGG 13175 Query 205461 CGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGT 205519 ||| ||||||| |||| || ||| |||||||| |||| || |||||| || Sbjct 13176 AGATGCAAGCGCACTGCTTG-AGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATG 13234 Query 205520 GTCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGG 205577 | | ||| ||||||| | ||||| ||| | ||||| |||| ||| ||||| | Sbjct 13235 GCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGG--CGTGCCGGCGTTGAACAGCGTCG 13292 Query 205578 GGCTGGCGTGGCTGAAG 205594 | | ||||| ||||| Sbjct 13293 GCGTCGCGTGCGTGAAG 13309 >seq69 Length=49210 Score = 114 bits (126), Expect = 2e-20 Identities = 313/469 (67%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || |||||||| || ||||| | |||||| || | Sbjct 8478 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGA 8537 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||||| || ||| |||||||| || || | ||| || | | | Sbjct 8538 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAG-AGCAGAACGAGCCC 8596 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || ||||| ||||| || || || ||||| |||| | ||| | || | |||| | Sbjct 8597 GAGAAGAAGATGCCCTCAACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCG-CG 8655 Query 160094 GTGTCA-TGGGTCCACCTTTTGGCCCATTCAGCCTTCTT-TGCGATGCACGGCATGCGCT 160151 | | | | | |||| | ||||| | |||||||| ||| | ||| || || || Sbjct 8656 GCGCGAGTCGCACCACTTAAGCGCCCAGTGCGCCTTCTTCTGC-ACGCAGGGGATCGTCT 8714 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211 ||| |||| | | || || ||| || |||||||| || | || ||| Sbjct 8715 CGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAGCA 8774 Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271 |||||||| || | ||| | || || || || ||||| ||| ||||| | || Sbjct 8775 GCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCATAGAAGCAACGCG 8834 Query 160272 CCTCCAGATACTGCACCTC-CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 |||| || ||||||||| ||| |||| | | || || | || || | || Sbjct 8835 CCTCAGGAACCTGCACCTCGCTG-CTGAAGTTCATCGCGAGGTTCTCGTTGACGATGCCA 8893 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 || |||||| ||||| || | |||||| |||||| | | ||||| Sbjct 8894 TCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGT 8942 >seq513 Length=15584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 116094 TCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCG 116153 ||||| | | | |||||| | || || |||||||| | ||||| || |||||| | ||| Sbjct 4216 TCGTGCCAGATGTACCAACGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACATCGCG 4275 Query 116154 AGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTG 116213 ||||||||||| |||||| | || || || | | | ||| | ||||| || Sbjct 4276 AGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAGATTTC 4335 Query 116214 ATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAG 116273 || ||| | || || || |||||||||||| |||||||||| | ||| || ||||| Sbjct 4336 ATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGGAACCGCTTAAGGTGCAG 4395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795025390913600