Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq208 181 1e-40 seq441 150 2e-31 seq69 111 2e-19 >seq208 Length=29794 Score = 181 bits (200), Expect = 1e-40 Identities = 725/1126 (64%), Gaps = 34/1126 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || || ||| | ||||| |||||||| || |||| || || ||||| || || ||| Sbjct 12359 AGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTT- 12417 Query 110152 GAGCGTCGAGCAGTTTCTACG---GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || ||| ||| || | ||||| ||||| |||||||||| ||||| || Sbjct 12418 --GCTTCGCTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTG 12475 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268 ||| || ||| ||||| || | || || | | | ||||| || || || | Sbjct 12476 CGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTG---TCGTCG 12532 Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328 || ||| | |||| || || || ||||| || |||||||| | |||||| | || Sbjct 12533 TTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCG--GGCG 12590 Query 110329 --GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCT 110383 ||||| || | | || || | |||| || | | || || | ||||| Sbjct 12591 ACGTGTACTCAAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTG---CCGAGGTTCT 12647 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 ||| ||||| ||| |||||| | ||||| ||||||||||| || || || || || Sbjct 12648 GCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 12707 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTTAGCGA 110500 |||| |||| ||| || || ||| | | | ||| || ||| || |||| ||| Sbjct 12708 TCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC--GCGC 12764 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG--A 110558 | || || |||||||| | ||||| |||| || || | || ||| || | Sbjct 12765 GGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC--CACGTCGTGTA 12822 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| ||||| || || ||||| ||| ||| | || ||||||| | ||| Sbjct 12823 GAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTT 12882 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCAT 110677 ||||||||| || || ||||||||||| |||| || ||||| || | || | || | Sbjct 12883 CATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC-TCGT 12941 Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737 || ||||| || || | || || | ||| || | |||||| || || || | Sbjct 12942 TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGT 13001 Query 110738 AGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 | | |||| || ||||| || || || |||| | ||||| || || ||| | | Sbjct 13002 ACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGT 13061 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 |||| || | ||||| || | | || | || || || || || | || | Sbjct 13062 TGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACG 13121 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | || | || || |||| ||| | | | ||| || || || |||||||| || Sbjct 13122 AGTTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGC 13181 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 || |||| |||| || |||| || || || ||||| || |||| |||| | | Sbjct 13182 AAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCA 13241 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | ||||| || |||| ||| || || ||||| || || ||||| || || || ||||| | Sbjct 13242 GGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGT 13301 Query 111035 GAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTAC 111094 | |||| | | ||| ||||| | | ||| || ||||| |||| | | || | Sbjct 13302 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCT 13361 Query 111095 CGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 ||| || || | ||| || |||| | ||| | || || || | ||| ||| Sbjct 13362 TGTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCAC 13421 Query 111155 CAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | || ||| | ||||| |||||| || ||||||| |||||||| Sbjct 13422 CGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 13467 >seq441 Length=17543 Score = 150 bits (166), Expect = 2e-31 Identities = 332/492 (67%), Gaps = 33/492 (7%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 14939 AATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 14998 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 |||| | |||| || || | ||| ||| | || ||| |||||||| || || Sbjct 14999 TGTACCCGCAAGCACAACCACGCC---CTCGCTCGAGTTGAAGCCGTCCATCTCGACAAG 15055 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG--- 11669 |||||||||| || | || ||||| || || |||||| | ||||| Sbjct 15056 CAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATT---------ACCACCAGA-GAACGTTC 15105 Query 11670 -CTTCTTAC---------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT 11719 ||| ||| ||||||| || || |||||||| || || || ||||| || Sbjct 15106 CCTTGCTACGTGCACGAGCGACAGCATCGATTTCATCGATAAAGACAATGCACGGAGAGT 15165 Query 11720 TGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCT 11779 | ||||| || | ||| | || || |||||| || || ||||| || ||||||| Sbjct 15166 TTGCACGAGCTTCACGGAACAAATCGCGCACACGCGACGGACCCACACCGACAAACATCT 15225 Query 11780 CAACGAAGTTTGCGGCAGAAC-ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCT 11838 ||| ||| | | | | ||| |||||| ||| || ||| ||| |||||||| | || Sbjct 15226 CAATGAAATCCGAGCCCGAAATACTGAA-GAATGGCACACTAGCTTCACCAGCCGTTGCC 15284 Query 11839 CGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATC 11898 ||||| || |||||||| || || || | || | || ||||| || |||||| Sbjct 15285 TTCGCGAGCAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAGGGCACCCTTCGGGATC 15344 Query 11899 TTGGCACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAG 11957 ||||||||| || | | ||| || || ||| |||||| || |||| |||| | Sbjct 15345 TTGGCACCAAGATCAGTGAATCGCTTCTGGTTTC-GGAGGAAATCAACAAACTCCATGAT 15403 Query 11958 TTCCTCCTTGGC 11969 ||||| ||| || Sbjct 15404 TTCCTTCTTCGC 15415 >seq69 Length=49210 Score = 111 bits (122), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||| ||||| || ||||| || ||||||||||| || Sbjct 8501 TGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGGCCG 8560 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || || |||||||||||||| ||| Sbjct 8561 CGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCAACAGCA 8620 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG--ACTTGTCGAACCACTTGAGAGCC 119684 ||||| |||| | |||||| || || | | || | | |||| ||||||| || ||| Sbjct 8621 GCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTAAGCGCC 8680 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTT 119744 |||| ||||| || | |||||||| || | |||||| || ||| || ||||| Sbjct 8681 CAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTC 8740 Query 119745 TC 119746 || Sbjct 8741 TC 8742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588879849668000