Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq208 230 3e-55 seq69 145 9e-30 >seq208 Length=29794 Score = 230 bits (254), Expect = 3e-55 Identities = 576/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| ||||||||||||||||| Sbjct 12632 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTAC 12691 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 12692 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 12751 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 12752 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCAC 12809 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | ||||||| || |||| || || ||||| || ||| | || Sbjct 12810 CCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 12868 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 ||||||| ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 12869 GCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 12928 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 106898 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 12929 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCGT 12986 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 106955 |||| ||||| || || | |||| || ||||| || || ||| | |||| |||| Sbjct 12987 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACAT 13046 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | ||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 13047 AACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 13106 Query 107016 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 | || || || ||||| || | || | | | || | | || || || || Sbjct 13107 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCC 13164 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 13165 GGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTC 13224 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 13225 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAA 13284 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 13285 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 13344 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 | || ||||| | | ||||||||||| ||| || |||| || ||| | || || Sbjct 13345 GGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCG 13404 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 || || ||||| ||| || | || || |||||| || || |||| ||||| Sbjct 13405 CTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 13464 Query 107374 GTAACCAAAATCATAGTCCCG 107394 ||| | | ||| |||| || Sbjct 13465 GTAGTCGTACTCAAAGTCGCG 13485 >seq69 Length=49210 Score = 145 bits (160), Expect = 9e-30 Identities = 341/503 (68%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 8201 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 8260 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 |||| || || ||| | | || | || ||||| | |||| | |||||| || Sbjct 8261 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACACCAAGCGCGTGGAGGAGGCG 8319 Query 117105 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | || | |||||||||||| | |||| ||||||||||||||||| | Sbjct 8320 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCA 8378 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | |||| || ||| | ||||| ||| |||| || || | ||| ||| Sbjct 8379 CCGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGT 8438 Query 117224 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAAC 117279 |||| || || || | | | || | || | | ||| |||| | || Sbjct 8439 GGATGCGAGACTC---AGGGAGCTTGTTGGCGAGCTTCGAGTACAGCAGGCACG-CGAAG 8494 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || |||||||||||| || || || || || || || ||||||| ||||| |||||| Sbjct 8495 TCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 8554 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| Sbjct 8555 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCA 8614 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATTT 117458 ||| || ||||| | | ||||||||||| | ||| | | | ||| |||| || Sbjct 8615 ACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCACTT 8673 Query 117459 CATTGCCCATTTCGCCTTCTTCT 117481 | ||||| | ||||||||||| Sbjct 8674 AAGCGCCCAGTGCGCCTTCTTCT 8696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589884485634400