Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq513 217 1e-51 >seq513 Length=15584 Score = 217 bits (240), Expect = 1e-51 Identities = 410/599 (68%), Gaps = 3/599 (1%) Strand=Plus/Minus Query 29789 CGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT 29848 ||||||| ||| ||||||||||| || | || ||||| ||| || || || | |||| Sbjct 4399 CGAGCTGCACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 4340 Query 29849 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29908 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 4339 GGATGAAATCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 4280 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 |||| ||||||||||| || || ||||| |||||||| | || | ||||| | ||| | Sbjct 4279 AGCTCGCGATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGTTGGTACATCTGGC 4220 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||||||||| |||| | ||||| ||||| || | |||| ||||| || || |||| Sbjct 4219 ACGAGAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 4160 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | || ||| |||||||| || ||| ||||||||| | || | |||||| Sbjct 4159 TCTCCTTCAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 4100 Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30148 || ||| || | | | | |||||| || || ||| || ||||| || || Sbjct 4099 TCTTGAGCTTGTGAATGACCTCCGCCAGCTGGTCGACTCCCTGGCCAGAGTAATCCGCAT 4040 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| |||||||| || || || || | ||||||||| || ||||| ||||| || | Sbjct 4039 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCACTGGAAGCCATACACTGGTCCGAGAT 3980 Query 30209 CTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267 | || |||| | || || ||| || | | || | | || |||| || ||| | Sbjct 3979 CGCCAGCTTCACGATG-TCCAAGACCGATGCTCTCTAGGTATTCCTTGGATCCATTGCCA 3921 Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAAC 30327 |||||||| | | ||||| || | | |||| ||||||| || |||| |||| Sbjct 3920 TCCCAGATATGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAAC 3861 Query 30328 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 ||||||||||| ||| ||||| | ||| || || | |||||||| || || ||||| Sbjct 3860 CACAGCAGCTCTTCCGCGACGCCGCGCCAGAATACGCGTTTGGTCGTCAGCAGCGGGAA 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408552560847380