Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq208 338 1e-87 seq69 260 3e-64 >seq208 Length=29794 Score = 338 bits (374), Expect = 1e-87 Identities = 1070/1634 (65%), Gaps = 61/1634 (4%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || ||||| |||||| ||| | | | | | ||| |||||||| || | | | Sbjct 11770 GTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGC 11829 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 |||| || ||||||||| |||||| | | || || | | | || |||| || | Sbjct 11830 CTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCG 11889 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGT---T 212869 | ||||||||| || || ||| | ||| ||| ||||| ||||| | Sbjct 11890 CACGTTCTGCACTGAGCC---GTGGTCGTGCAGGATCTGGTTGCGCA---CCTCGGGCGT 11943 Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACT---TGACCAGGTGAGGGTTGACTATCTGGAAGTC 212926 ||||| || | ||| | | || | | ||||| ||| || ||| ||| || Sbjct 11944 CCAGATACC---GAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTC 12000 Query 212927 ACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTT 212986 |||| ||||| | | | ||| | ||| | ||| | |||||||| ||||||||| Sbjct 12001 GCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTT 12060 Query 212987 CCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCAC 213046 ||||| ||||| || || || || ||||| || || | ||| || ||| | ||| Sbjct 12061 GCCCAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCAC 12120 Query 213047 TCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTC 213106 |||| || ||| | | | ||| | ||||||||||| ||| ||| ||| | Sbjct 12121 ACCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGAC--GTCGGC 12178 Query 213107 GTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTA 213166 || ||| ||||||||| |||| |||||||| ||||||||||| ||||| ||| Sbjct 12179 GTG----ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTA 12234 Query 213167 AGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTA 213226 || ||| ||||| |||||||| || ||||| || |||| || || || |||| Sbjct 12235 GCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGCCTCCATCGCGCCGAAGTA 12294 Query 213227 GATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG-GCATCA 213285 | || || || || | | ||||||||| |||||| | | || | | | | Sbjct 12295 CAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC 12354 Query 213286 TCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCA 213345 |||| | |||| | || || || ||||| || ||||||||||| || | ||| | || Sbjct 12355 -CATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCA 12413 Query 213346 GGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAG 213403 |||| ||| | || ||| | ||||| ||||| |||||||| ||||||||| Sbjct 12414 GGTTG--CTTCGCTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAG 12471 Query 213404 GTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCC- 213462 |||||| ||| | || ||||||| | | ||| | || |||| || || | Sbjct 12472 GTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCT------TGAAGTCGAAGGTCTT 12525 Query 213463 --CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT- 213519 |||| | |||||||| | ||| |||||| || |||||||| || || ||||| | Sbjct 12526 GTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTC 12585 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 | | | | |||||||| | | |||| ||| |||||||| | ||||| ||||| |||| Sbjct 12586 GGGCGAC-GTGTACTCAAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGT 12644 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638 |||| ||||| ||||| ||| | ||| || ||||||||||||||||| || | || ||| Sbjct 12645 TCTGCTGGTTCGACTT-GCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTC 12703 Query 213639 TCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 || | ||| ||| | || ||| | |||||| | | || || || || | Sbjct 12704 TCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA----TCGTCTTGC- 12758 Query 213699 GCTC-CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCC 213756 || | ||| | | || ||||||||| | ||| ||| | | ||| |||| ||||| | Sbjct 12759 GCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCG 12818 Query 213757 TGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACT 213815 ||| || ||||| | | |||| || | |||||||| || |||| | || Sbjct 12819 TGTAGAGACCCGGCGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACG 12877 Query 213816 CTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTC 213872 | || ||||||||| || |||| ||||| |||| ||| || || | | | | | Sbjct 12878 CGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC 12937 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 |||| || ||| || || || || || || |||||||| |||||||||||| Sbjct 12938 TCGT---TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGC 12994 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCC 213989 |||| ||| || || || | |||| | ||| ||| ||||| ||||| | ||| Sbjct 12995 TCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCC 13054 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 |||||| | |||||| | ||| || || ||||| ||| ||||| || || Sbjct 13055 GTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGG 13114 Query 214050 ATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTG 214109 || |||||| || || | | |||| || | || ||||| ||||| ||||| Sbjct 13115 ATGTACGAGTTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTG 13174 Query 214110 GAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGG 214169 ||||| ||||| || | | || || |||||| | || ||| || | | | Sbjct 13175 GAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATG 13234 Query 214170 TTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGG 214229 |||| |||||| ||| ||||| || | | || ||| | |||||| ||||| || Sbjct 13235 GCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGC 13294 Query 214230 CTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATG 214289 | || || | | || | | || | | | ||| ||||| || | | | |||| Sbjct 13295 GTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATG 13354 Query 214290 TCGTGCTTGTGGAT 214303 |||||||||||||| Sbjct 13355 TCGTGCTTGTGGAT 13368 >seq69 Length=49210 Score = 260 bits (288), Expect = 3e-64 Identities = 567/841 (67%), Gaps = 17/841 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 8200 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 8259 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | | || | | | || ||| | Sbjct 8260 CCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCAACACCAAGCGCGTGGAGGAGGCG 8319 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||| | ||||||||| |||||| || ||||| ||| Sbjct 8320 ATCGGCGCAGAACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCAC 8379 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || |||||||||||| ||| ||||| || | | |||| | Sbjct 8380 CGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGTG 8439 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| ||||| | | | |||||| || | |||| | || |||| ||| || ||||| Sbjct 8440 GATGCGAGACTCAGGGAGCTTGTTG-GC--GAGCTTCGAGTACAGCAGGCACGCGAAGTC 8496 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||| | || ||||| || ||| ||| |||| ||||||| ||| |||||||||| Sbjct 8497 GCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 8556 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||||||||||||||| || Sbjct 8557 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCAAC 8616 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCCAGGA 48318 || ||||||||| || | ||| |||| | || | | ||| | ||| Sbjct 8617 AGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTC---GCACCACTT 8673 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 ||||||||||| |||||||||| | ||| || |||||||| ||||| |||| || | Sbjct 8674 AAGCGCCCAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGAAGGTG 8733 Query 48379 CTTGCACTC-ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 || ||| ||| |||| | || || |||||||| | ||||| ||| | Sbjct 8734 GTTCTTCTCGGTCTG-GTCCTTGATGTACGTGTCGATGAGCAGC---GAGTACACCTCCG 8789 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| || |||||| | |||||| ||||||| Sbjct 8790 AGTGGATGTTCTCAATCGCAATCTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCA 8849 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || || ||| || | || ||||| ||||| || ||||| || || |||| Sbjct 8850 CCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGA 8909 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | || || || || || | ||| | ||||||||||| ||||| |||||| ||| | Sbjct 8910 ACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGAGGTTGTTCCAGTCCTTGA 8969 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | | | ||||| | ||||| | ||||||||| ||| || || ||||||| Sbjct 8970 GGTCGTGGACGAGGTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCGGCCTTCTTGTACA 9029 Query 48675 T 48675 | Sbjct 9030 T 9030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931380727270400