Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq69 203 6e-47 seq208 179 7e-40 >seq69 Length=49210 Score = 203 bits (224), Expect = 6e-47 Identities = 562/852 (66%), Gaps = 29/852 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| |||||||||||||||| | | || |||||| || |||||||| || || Sbjct 9036 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTT---CTGGACGGCTGAAGAGATCGACCTC 8980 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | | ||| | | | |||| || || | | |||||| | || ||||| || Sbjct 8979 GTCCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCAC 8920 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATT 25655 ||| | || ||||| || ||| |||||| || || |||||||| || |||| || || Sbjct 8919 GTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTC-GCGATGAACTT 8861 Query 25656 CACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || ||| || |||||| | | || |||| || ||||| || |||||||| || || | Sbjct 8860 CAGCAGCGAGGTGCAGGTTCCTG-AGGCGCGTTGCTTCTATGGCTTCCAGATTGCGATTG 8802 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 | || | ||||| |||||||| | ||| || || |||||||| | ||| Sbjct 8801 AGAACATCCACTCGGAGGTGTACTC---GCTGCTCATCGACACGTACATCAAGGACCAGA 8745 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||| | | || | | ||||||||| || ||| || | ||| |||||||| Sbjct 8744 CCGAGAAGAACCACCTTCTCCGCGCCATCGAGACGATCCCCTGCGTGCAGAAGAAGGCGC 8685 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| | |||||| | || | |||| |||| | |||||| | || || | Sbjct 8684 ACTGGGCGCTTAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGT 8625 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | |||||||| ||||||||||| ||| || ||||| ||| | ||||||||||||||| Sbjct 8624 TCGCTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCAAG 8566 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || || ||| || |||||||| ||| | ||||||||| Sbjct 8565 AAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTGATCTCGCGTGACGAGGGT 8506 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 |||||| | || || || |||||||| ||| | | || || | |||| | || | Sbjct 8505 CTCCACTGCGACTTCGCGTGCCTGCTGTACTC--GAAGCTCGC-CAACAAGC--TC-CCT 8452 Query 26071 GAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| | | || || ||||| || || || | |||||||||||||||| Sbjct 8451 GAGTCTCGCATCCACGAGATCATTCGCGATGCCGTTGCGATCGAGAAGGAGTTTGTCCAG 8392 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | || |||||| |||||| |||| ||||||||| Sbjct 8391 GACTCGCTCCCGGTGGAGCTCATCGGTATGAACTCGTCCCTCATGTGCCAGTACATTGAG 8332 Query 26188 TATGTG-GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAA 26246 | | || ||||| | || || | ||| || | |||| |||||| | | || Sbjct 8331 T-TCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTTGCCAAGATCTACAAGGTGTCGAA 8273 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||||||||||| ||||| | || ||| | | || |||||||||||||| || ||| | Sbjct 8272 CCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCG 8213 Query 26307 GGTCGGCGACTA 26318 || ||||| || Sbjct 8212 CGTGGGCGAGTA 8201 >seq208 Length=29794 Score = 179 bits (198), Expect = 7e-40 Identities = 740/1153 (64%), Gaps = 42/1153 (4%) Strand=Plus/Plus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 |||| || || ||||| || ||||| ||||| || | ||| | | |||| | | Sbjct 12369 CGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAG 12428 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 | || || | || || |||||| |||||| | ||||||||||| | |||| ||| | Sbjct 12429 CCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCT 12488 Query 221628 TAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTT 221687 | | ||| |||||||| | || ||| | ||| || | ||| Sbjct 12489 TGGTGATGTCGTACAGCTTCTTG------------AAGTCGAAG--GTCTTGTCGTCGTT 12534 Query 221688 CCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGG 221747 | ||||| | || || | | || ||||| ||||| || |||||||| | Sbjct 12535 C-ACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG 12593 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| | | ||| ||||||||||| | ||| || || |||| | || | Sbjct 12594 TGTACTCAAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGT 12653 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| ||| | ||||||||||||||| | || ||| ||||| | ||| | Sbjct 12654 TCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCG 12713 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCAC---CC 221923 | | || ||| | |||||| | ||| |||| | |||| ||| || | || Sbjct 12714 ACTCGAGGATCGCGAACCAGAGCTG-CTGCGCGCGGATCGTC---TTGCGCGCGCGGCCC 12769 Query 221924 TCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 ||| || | ||| | || ||| || |||| ||||| ||| | || || Sbjct 12770 TCGCGCT---CGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGTAGAGA 12826 Query 221984 CCTGGACACCTGG--CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCA 222041 || || | ||| | |||| || | ||| ||||| | |||| | | || | || || Sbjct 12827 CCCGG-CGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCA 12884 Query 222042 TGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGC 222101 |||| || || |||||||||| ||| | |||||||| | | || ||| ||| || Sbjct 12885 TGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGC 12944 Query 222102 CGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGA 222161 ||| ||| ||| | || || | ||||| || ||||| ||||||||||||||||| || | Sbjct 12945 CGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACA 13004 Query 222162 CGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGA 222221 || | | ||| ||||| ||||||||||||||| | | || |||||| Sbjct 13005 TCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGA 13064 Query 222222 AGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCA 222280 | | ||| || | || || || ||||| || ||| ||||| ||||| ||||||| Sbjct 13065 ACACGCGCAGCATGGGCACGAGGCCGTTCGA-CGAGCCGTTCGTGCCGCGGATGTACGAG 13123 Query 222281 CCGCCGGCCCTCAGGTTACTGGCAGAC--ATGCCGATACCACCGGCGTGTTTCGAGATCA 222338 | || | | ||| ||| || | ||||| || ||||| || ||||| Sbjct 13124 TTGGTCGCGCGGATGTT--GTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGC 13181 Query 222339 TGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCA 222398 ||||| |||||| ||||| ||||||||| || ||||| ||||| | | |||| Sbjct 13182 AAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCA 13241 Query 222399 GAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGT 222458 | || || ||||||| ||| | | | | |||||| |||||||| || | |||| Sbjct 13242 GGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGT 13301 Query 222459 GTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCC 222518 | || ||| ||| ||||| ||||||||||| | | | |||||| || | Sbjct 13302 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCT 13361 Query 222519 CGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGG 222578 ||| || | |||| | || ||| | ||| || | || ||| ||||| Sbjct 13362 TGTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCGCT---CAGCGACCTTGC 13418 Query 222579 AGCTGGAG---AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAA 222635 | | | || |||||||| || || || |||||||| |||||||||| | |||| Sbjct 13419 CACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAA 13478 Query 222636 AGTCTCTGCCGTG 222648 |||| | | |||| Sbjct 13479 AGTCGCGGTCGTG 13491 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 221030 TGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTC 221089 || || ||||| | || | || | || | | |||| |||| |||||| | ||| | Sbjct 11897 TGCACTGAGCCGTGGTCGTGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATACCGAGC 11956 Query 221090 TCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTC 221149 || ||| |||| | || || ||||||||| | ||| || || | ||||| | Sbjct 11957 TCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGG 12016 Query 221150 CTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCC 221209 | | ||||| ||| | |||||||| ||||| ||||||||||||||||||||| || Sbjct 12017 CGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCG 12076 Query 221210 GTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || || || ||||| || || | |||||| |||||||| Sbjct 12077 GTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCA 12119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928693166086400